Basic Information

Gene Symbol
azf1
Assembly
GCA_951812415.1
Location
OX638310.1:85717960-85728281[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.0024 0.29 12.6 2.9 1 23 561 584 561 584 0.97
2 9 2.2e-05 0.0027 19.0 1.1 1 23 590 612 590 612 0.99
3 9 2.7e-07 3.2e-05 25.0 0.5 3 23 621 641 620 641 0.98
4 9 2.8e-06 0.00034 21.8 0.5 1 23 647 669 647 669 0.97
5 9 0.014 1.7 10.1 1.1 1 23 675 697 675 697 0.98
6 9 0.003 0.36 12.3 2.5 1 23 703 726 703 726 0.95
7 9 0.0028 0.34 12.4 0.1 1 23 732 756 732 756 0.95
8 9 5.4e-06 0.00066 20.9 0.2 1 23 762 784 762 784 0.98
9 9 0.00027 0.033 15.6 4.7 1 23 790 812 790 812 0.95

Sequence Information

Coding Sequence
ATGAACACCCTCCTTACAAAGGAGGACATCGAGGGAATCAGAGCGGCCCTAGGGCGCGAATTCCCGGATCTGGCCGAAAACGCCGGAACCATCCCTGACACAATAAATTGCAATACCTCGTCGACAAACAACTATTTTATGGAATGCGAAACCGGAAATAGTTCCAGCAATTTCATAAACTTCGAATATCATCCCGCCGCACAACGAGGGAAGTACCAGTGGCAAACAGTTAACCGTAAAAGTGCTCACCCCTATAAAAGGAGCGCCGAAGGCGCACATAAACTTCCAGTCATCATCGGAGCATCGAACCGGAACCCAACCGGGCAGACAGCACCATCCAATAGTTTCCAGATCCTGGGCGATACATCACTCATTGAAAACATCTCGGACGAAGCAGCAGCCCAACCAGACGAAACCGACTTAGATTTTCCGGAGCTAAATCGTAAAAAGGTAAGGGTTTCATATGCAATTCATAGTGATACACACCCAAAAAGGGCGAGAGTGAGCGAAGGGCGCGGAAATACGGTCAGGGCCCTTACAGGGCTAAATGTGAAGTATTCGGGGTCTAAGGGCACAAATCCTAAGCGTGGGGTGACAAATGGAAGAGCGCCCGAGAAGAGGAGGTTCTGTCCTCCCATATCGGTTCTTGACCTTGAGTCAAAGATAGTAACATGTATGGTAGAAGCTTCCTTAGAACGAACCTCCAATAGCCTCCGAGTTAGCTCGTCCGCTCTCATCCACGTCGCCCTGACGCTCATCAGAGGCTGCGTTCAGTACGGTATCACTATCTTCGCAATTACAACAAAGACCAACTTGCGCAAACTACAAGTCGCAGTGAACAAAGTTTTACGAGCCGCCCTCGGAGCCTTTCGCACCACGCCCATCGATTCGCTGCTTATGGAGTCCGGATGCGATAGCATCCTCTCCCTCATCAAAAAGGCGCAGATAAATCTTGCGGCTAAAAGTGAACTCGACCGGAGTAGTCCGCACCACTTTATCGTCACCAGCTCGGCCGCTGCCACCAACAATACGTCAACATCTGCGCTATGGAGCGCTCGACGTACCGCCAAAAGACATATGGCACAACAGCTATCTACAGAGTGGGCCGATAATCCGACCTTCCTGGCCCAACATTGGCGTGGCCCCCATCCGCCGGCATACAACCCGCTACAAGACAGGAAGGACTCGGTCATAATAACCAGGaTAACCGAAACTGATTATCTGCCACATCAAATTTGTAACAACTGTATCCAGAATATAAGCGGAGCATATTTCTTTCGCCTACAATGCCACAAGGCCGAAAATATATTGTGTCGCTTACATAACGCCCTCTCTAGTTTATCTTCACCGTGTAAATCCCAAAGTGATTTTGCGTTTCCAAATGATGATGAATCTCTTTCTCATATCTCAGAAGATGAACAAATAACATCCGACAATGGTGATGAGTACGAAAAAgatatgaaaattgaatttgatgGTGTCGAATACAAAATTGATTCAGAAATCATTCGAATTGACCAAGAAGATGTTCAAGAAAATTTAGAAGAATATTCTGATATTGAAAAGGATTTTCCCGAAGACTCTGTAATGCCGAACATAAAAATAGAAATCGTCGATCAACACAATCCAGATGAAAGTCGAAGTACATCATTAGCATCAGAgccgttaaaaaaaatgtcatataAATGTATTGAATGTGATCAAGTTTTTGATAAGAAAAAGCATTACAATGAACATCTAAGAATATTCCATCCGTTTAGCAAAGTATACAAATGCGAGATTTGTGACTCTCGTTTTACTAAGGGCCAAAGTTTGAAGCGCCATATGATGATTCACCAAGCGGATCAGAAAAATAAACTTTGCACTTTTTGTGGCAAGGGGTTTACTCGTGCGGATGACCTCAGGCGTCACATACGAATTCATACAGGCGAGCGTCCATATGCGTGTACTATTTGCCCGAAACGTTACAAACAAACATCCGAACTAAAAGAGCATATGGTAACGCATTCTaaagataaaaattacatttgtaCAATATGTGGTAAGGCATTACAAACCCGTAATGGACACTACGTGCATATGAGGACTCATTTAGGTATTAAAAAACACATATGTGAACTATGTGGCAATCGATATGTTACATCAGGTGAACTGCATTCTCACATTCGACACATTCACGAAAAGAAGAAACCATTTGCATGTGACATTGTTAACTGCGGAAGAACTTTTGGCACAAAACCTTCTCTTGATATTCACAAAAGAGCTCATAACGGCGAGCGTCCATTCGAATGTACATATTGTAACAAGCGATTAGCTACTGCATCTTCTCTTGCCGATCATATACGAATTCACACTGAAACGAATCGCTTTTTATGCGCAATATGTCACAAGATCTTTCATGGAAGTCAAACACTTAAAAAACACATGCGAACTCATATCGAGCACAGCGATGAAATTAAGGATATACCGGAAACAGATTCGCTAACGAAAAATGCTTTCGAGTGTCTCTTGGAAAATCATTCTGATAGTCATTCCAACAATGATGTCCACTTTCAAAAAATGAGTGGCTTTCAACTCATTGTAGAGGAAGAAAAGGCAGAACATTATATGCTTGAGATGGAATGCGAGGATGATACCGTTCAATATGTTGATAGTTAA
Protein Sequence
MNTLLTKEDIEGIRAALGREFPDLAENAGTIPDTINCNTSSTNNYFMECETGNSSSNFINFEYHPAAQRGKYQWQTVNRKSAHPYKRSAEGAHKLPVIIGASNRNPTGQTAPSNSFQILGDTSLIENISDEAAAQPDETDLDFPELNRKKVRVSYAIHSDTHPKRARVSEGRGNTVRALTGLNVKYSGSKGTNPKRGVTNGRAPEKRRFCPPISVLDLESKIVTCMVEASLERTSNSLRVSSSALIHVALTLIRGCVQYGITIFAITTKTNLRKLQVAVNKVLRAALGAFRTTPIDSLLMESGCDSILSLIKKAQINLAAKSELDRSSPHHFIVTSSAAATNNTSTSALWSARRTAKRHMAQQLSTEWADNPTFLAQHWRGPHPPAYNPLQDRKDSVIITRITETDYLPHQICNNCIQNISGAYFFRLQCHKAENILCRLHNALSSLSSPCKSQSDFAFPNDDESLSHISEDEQITSDNGDEYEKDMKIEFDGVEYKIDSEIIRIDQEDVQENLEEYSDIEKDFPEDSVMPNIKIEIVDQHNPDESRSTSLASEPLKKMSYKCIECDQVFDKKKHYNEHLRIFHPFSKVYKCEICDSRFTKGQSLKRHMMIHQADQKNKLCTFCGKGFTRADDLRRHIRIHTGERPYACTICPKRYKQTSELKEHMVTHSKDKNYICTICGKALQTRNGHYVHMRTHLGIKKHICELCGNRYVTSGELHSHIRHIHEKKKPFACDIVNCGRTFGTKPSLDIHKRAHNGERPFECTYCNKRLATASSLADHIRIHTETNRFLCAICHKIFHGSQTLKKHMRTHIEHSDEIKDIPETDSLTKNAFECLLENHSDSHSNNDVHFQKMSGFQLIVEEEKAEHYMLEMECEDDTVQYVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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