Bmor010729.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:72497555-72511523[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.003 0.36 12.3 1.0 1 20 198 217 198 218 0.95 2 11 0.068 8.2 8.0 3.2 1 23 216 238 216 238 0.98 3 11 2.8e-05 0.0034 18.7 1.2 1 23 247 269 247 269 0.98 4 11 0.0039 0.47 11.9 0.3 1 19 349 367 349 370 0.93 5 11 1.5e-05 0.0018 19.5 1.5 1 23 566 589 566 589 0.95 6 11 1.2e-06 0.00014 23.0 0.4 1 23 594 616 594 616 0.98 7 11 0.00035 0.043 15.2 2.9 1 23 622 644 622 644 0.93 8 11 0.00012 0.015 16.6 1.7 2 23 651 672 650 672 0.98 9 11 0.00039 0.047 15.1 2.7 1 23 678 700 678 700 0.98 10 11 0.00068 0.082 14.3 0.4 2 23 706 728 705 728 0.96 11 11 2.6e-07 3.1e-05 25.1 5.3 1 23 734 756 734 756 0.98
Sequence Information
- Coding Sequence
- ATGACAGAATATAACGAAAATATGTGTAGAGTTTGTTTGCAGAGCTTTAAATCCGATTTCGAGAGCATCTTCGAAAGCGCGACTGACAAAACCAAGCTCTCGGAACTGGGTCTTCTATACGAGGAActttttaatttgtcgATCCACGTGGACGAGCCACAGCAGCCACAGTATATATGCAATTATTGCAACCTTCAATTGAAATTCTTccacaaattcaaaattaaagcgGTCGAGTCGTACGCGATATTCGTCCGCTACAAATCGACAGAAAAAGATAGCTTTACAATTCTCGAACTACCCGACGACACCAatgatgaaaattacaaataccTCGACATACCTGGCGCTGTTGTACACCAAGCTGCACCGCCTGCAGGCTCCAGCGCAATGCCTATGTGCACCAGTTCTGCCATCGACAGTGATCCTATGATAAAAATCGAACAGGATGTATTGTACGAAATTGTCGCCAAAGAGGAATACGAAGTTCAAGAGTTTTGTACAGCTGTAATCAATTCGGACAGCTCGGTTTTAAACCAGGTGCATGATATGAAAATGGACGAAGATAAGGACAAAGCGGcgacaaaaaaatttccgtgtaAAAGTTGCGACAAAGTATTCGacacaatttggtttctgagaCGGCATAGATGTGATTTATGCAACAGGATTTTAAAGTACAAAAGAAACTACGAATTTCATATGAAAAAACACCGAAACGATATTCGTTTCTACCGTTTTCGGTGTTCGATGTGTGATAAACGTTTTCAAAGCAACGCCGCCTTAGACAGACATTTTCGAGTCCATGCACAGCCTACAGGATCCAGCGCAACGCCTATGTGCACCAGTTCTGCCCTCGACAGTGATCCTCCGATGAAAATCGAACACGATCTATCGGATGAAATGGTCGGCAAAGAGAAATACGAAGTTCAAGAGTTTTCTACGGATGTAATCAGCTCGAACAGCTCGGTTTTAAACCGGGTGCATGAAACAAAAGTAAAGACTAGATGCCGGCTAAGAAATGACAAGGAACcggcaaaaaaatttccgtgtaAAAGTTGCGACAAAGTATTCGACAAAATTTGGCATCTGAATACGCATAGtaTAATGCCGGAATACAATGAATTCATGTGTCGTGTTTGCCTTCAGGAGTACAACGAAGATTTCGAAAGTATTTTTGTTGACGATAATACGAACGATGCTCTGTCTGCGCTTGGTCTTCTTTACGAAGAATTGTTTCATCTGTCCATTCACAACGGAGAACCATATCCGAAATTTCTCTGCAACTATTGCAATTTGCAATTGAAACTGTTCCATAAATTCAAAACGAAAGCAGTCGATTCGTTTACAAAATTTTCCGCGTTCGATATTTGTAAAAATGATCGTTTCACCACATCCGAACTATCAAACGACGAAGAAGCAgctgaaaaaatgaaatacgaGATAGAATTGAGCGAAGAAAAACTCGACGAGACGACGATGACTTCGTTGGTTGAAAAGTTCGAAAGCTCTAGCGAAGATAGTCCGATGAAATTGGAACAAGAATACAACGATGATACAGCTGAAGATTCACTCGAATTTGAGGAAGTTATGTATCTTGACGAAGCATTGGACGATACTCTAGAAGTTCCTACTATGTCCACAACGGAATCGGTTGTGAAGGTTAAGGCGCCAAAGAAGCGAATAAGTGTGGAATTTCCATGCAAATCGTGTGATAAGGTGTTCGATGTAAAGGCGCATCTTACTAAGCACAGAAGAGACGTTCATAAACCTATTAAATATACTTGTACCCAGTGTCCAAAAAAGTTTATCTCGCAGGAATTGTTGAAAGTGCACATAAATATCCACAACGGCTTACCGGGATTTCAATGTGAACTATGCAACAAGACGTTCAAACAGCGAGCCCATTACATCTATCACAATCTGGGACATCGAAATGAACGTAACGTTCAATGCCATTTATGCAGTAAGGGATTCTTAAATAAATCGGATTTACGAATACATTTGCGCATGCATACTGACGAGAGACGTTACGAATGCGATATTTGTGGTCAAAAATTTCGAGCTTATTCGCACATGTCAAATCATCGATATACGCATTTGGGGAAAACTCTCGAATGCGAATTCTGTTTGCAAAAATACACTTCACCGTCGACGCTTAAGATGCATATAAAATCTGTTCATCGCGGCGAATGTCCGTACATTTGTGATACTTGTGGTAAGCCGTTCAAAAGAAAACATCACTTAAAGgCTCATCAAAAAACTCATTTACCGAAAGccgagaaaaaaatttaa
- Protein Sequence
- MTEYNENMCRVCLQSFKSDFESIFESATDKTKLSELGLLYEELFNLSIHVDEPQQPQYICNYCNLQLKFFHKFKIKAVESYAIFVRYKSTEKDSFTILELPDDTNDENYKYLDIPGAVVHQAAPPAGSSAMPMCTSSAIDSDPMIKIEQDVLYEIVAKEEYEVQEFCTAVINSDSSVLNQVHDMKMDEDKDKAATKKFPCKSCDKVFDTIWFLRRHRCDLCNRILKYKRNYEFHMKKHRNDIRFYRFRCSMCDKRFQSNAALDRHFRVHAQPTGSSATPMCTSSALDSDPPMKIEHDLSDEMVGKEKYEVQEFSTDVISSNSSVLNRVHETKVKTRCRLRNDKEPAKKFPCKSCDKVFDKIWHLNTHSIMPEYNEFMCRVCLQEYNEDFESIFVDDNTNDALSALGLLYEELFHLSIHNGEPYPKFLCNYCNLQLKLFHKFKTKAVDSFTKFSAFDICKNDRFTTSELSNDEEAAEKMKYEIELSEEKLDETTMTSLVEKFESSSEDSPMKLEQEYNDDTAEDSLEFEEVMYLDEALDDTLEVPTMSTTESVVKVKAPKKRISVEFPCKSCDKVFDVKAHLTKHRRDVHKPIKYTCTQCPKKFISQELLKVHINIHNGLPGFQCELCNKTFKQRAHYIYHNLGHRNERNVQCHLCSKGFLNKSDLRIHLRMHTDERRYECDICGQKFRAYSHMSNHRYTHLGKTLECEFCLQKYTSPSTLKMHIKSVHRGECPYICDTCGKPFKRKHHLKAHQKTHLPKAEKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -