Bmor025461.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638313.1:40503191-40512287[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0002 0.024 16.0 3.4 1 23 72 94 72 94 0.98 2 11 0.0012 0.15 13.5 9.5 1 23 100 122 100 122 0.96 3 11 7.4e-05 0.009 17.3 6.4 1 23 128 150 128 150 0.98 4 11 0.00029 0.035 15.5 2.3 1 23 156 178 156 178 0.95 5 11 2.1e-05 0.0025 19.1 0.5 1 23 184 206 184 206 0.97 6 11 1e-05 0.0012 20.1 0.1 1 23 212 234 212 234 0.98 7 11 7.7e-05 0.0093 17.3 1.8 1 23 239 261 239 261 0.97 8 11 8.2e-05 0.0099 17.2 0.2 1 23 267 290 267 290 0.97 9 11 0.00028 0.034 15.5 0.1 1 23 389 411 389 411 0.97 10 11 0.03 3.6 9.1 2.7 1 23 500 522 500 522 0.95 11 11 0.0054 0.65 11.5 5.2 5 23 535 553 527 553 0.92
Sequence Information
- Coding Sequence
- ATGGTATTATTCTCACTATTATTTAAAGATGATATTCTGCCAGGTATTTCTGTACAAGTCCAGAAGGTGATTCAAGGTCTAGAAGATACGGAAGATTCACAGGCCACGTCTTCAACACACTGCAAGCTTGAACCAGTACTGGAAATATCACCGAAAGTGGAGATGCCAGACCCTGAACAATCGCAAAGCGCAACGGTTGTAAAGGAACGACCGTATTCATGCGACGAGTGTGGAAAATCATTTTTGCTTAAACATCATTTAACAACGCATGCTCGAGTTCATACCGGAGAACGACCACACGTTTGTGTACACTGTGGAAAAAGTTTCGCCCACAAACATTGTCTGAATACCCATTTGCTGTTGCATTCAACGGAACGTCCCTATCAGTGCAGTGAATGCAAGAAAAGTTTCACTCTAAAACATCACTTATTAACTCATTCGCGTGTTCATAGTCGCGAAAGGCCGTTCGTATGTCAGGAATGTGGCCGGTCATTTCCTTTGAAAAGACACCTAGTTACGCACAGTAAATTCCATGCCGGAGAACGTCCATATGTTTGCGAAGAATGCGGCGAGAGTTTTGCACAAGAAAATCATTTAATAATGCATTCGAGaTTTCATGGCTCGTTAAATCCTTTCGTTTGTGGTGATTGTGGCGCGACCTTTCCACGAAAATTTCAATTAGTTAACCACGGACGTATTCATGGAAAAGTTCCGCACTCGTGTACAGTTTGTGGTAAAGAATTTTTACAAAAACGTACCCTTGTTTCGCATATGAGGATTCATACGGGCGATCAAGCTTATCCGTGTACAGGTTGCGGCGATGGATTTCATACAAAAGCTGAATTGAATCAACATATTCGCATAATGCATGGCGGTATCAATCCAAATTCTTCTAATACAACCGTTGTTCAAAGTCACGTTGTCACTACTGctcagcagcagcaacaacagcagcaacaacaacagcagcagcaacaacagcagcagcaacaacagcaacagcagcagcaacaacaacagcaacagcagcaacaacagcaacaacaacagcagcagcaacaacaacagcaacaaactATACACCAGCAAACCGTTACAGTTGTTAGTAATCCAAACAATTTGGTGACTACAATCGCCGCATCAGATACTGCTGGTAGACCACAATATGCATGCCGTGAATGTGGCAGTGCCTTTAATAGCAGAGAAGCTTTAGCCCTTCATTTACGACTTCACACAGGTGATAAGAGTTTAATGACCGATCTGTGCGCTCTAACGGCAGCCCTACCAGGACATTTCTTGAACACATCAAATTTAAATCAAGgaATGGCTACAGTTGTCGCTGCAAACCAAACTGTTGTTTCTCCGAATGCAGTACCCGTACAAATAATATCATCAACTGGACAAGTTGTTAGCCAAGCGATGGTTCAAAGTTCGCCACAACAACAGAACGTCGTGACAGCAGTTCAGCCCGTACAGCATGCACCAAAGCCGAAAACTCATTTTTGTGTCAGTTGCGGGAAAGGATTTGCTGCAAAACACGGCCTTTTGCAGCACAATCGTCGTCATCCAAACGGTGCTTGCACTCTTCGAACTCATGTCTGTGAATGCGGTAAAGCTTTCTTCCAGAAAAATCACTTGATGCTTCATCAGCGACAACATTTAGAAACCAAACCAAATATATCGCAACAACAGCAGGAAGCTTTAgcacaacagcaacaacaacaaaatcaaCAGCTCGCAAATCAACAGCAATCACAGCAACAGTCACAAGCACAACAGCATACGATGACGCGAGAAGTTTTGATTGGTAATCAGCCGGTTCATGTTCAGGTACTGCAGGGAACGAATACAGCACAAGTTATAAAATACGAAATTAATATACCGCAAGAAGGACAAAATATCGAGTGA
- Protein Sequence
- MVLFSLLFKDDILPGISVQVQKVIQGLEDTEDSQATSSTHCKLEPVLEISPKVEMPDPEQSQSATVVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCVHCGKSFAHKHCLNTHLLLHSTERPYQCSECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCGDCGATFPRKFQLVNHGRIHGKVPHSCTVCGKEFLQKRTLVSHMRIHTGDQAYPCTGCGDGFHTKAELNQHIRIMHGGINPNSSNTTVVQSHVVTTAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTIHQQTVTVVSNPNNLVTTIAASDTAGRPQYACRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLNTSNLNQGMATVVAANQTVVSPNAVPVQIISSTGQVVSQAMVQSSPQQQNVVTAVQPVQHAPKPKTHFCVSCGKGFAAKHGLLQHNRRHPNGACTLRTHVCECGKAFFQKNHLMLHQRQHLETKPNISQQQQEALAQQQQQQNQQLANQQQSQQQSQAQQHTMTREVLIGNQPVHVQVLQGTNTAQVIKYEINIPQEGQNIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322793;
- 90% Identity
- iTF_00324691;
- 80% Identity
- -