Basic Information

Insect: Beris morrisii
Gene Symbol: PRDM5
Assembly: GCA_951812415.1
Location: OX638310.1:38382144-38383670[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.7e-05 0.0021 19.3 0.4 2 23 147 168 146 168 0.97

2 12 4.4e-06 0.00053 21.2 2.2 1 23 174 197 174 197 0.97

3 12 0.00013 0.016 16.5 0.6 2 23 208 229 207 229 0.97

4 12 3.7e-06 0.00045 21.4 2.0 1 23 235 258 235 258 0.98

5 12 0.089 11 7.7 1.4 2 23 269 290 268 290 0.97

6 12 0.00023 0.028 15.8 2.5 1 23 296 319 296 319 0.95

7 12 0.0065 0.79 11.2 0.4 1 23 326 348 326 348 0.96

8 12 0.00039 0.048 15.1 0.9 1 23 354 377 354 377 0.97

9 12 0.00071 0.086 14.2 0.3 1 23 387 409 387 409 0.98

10 12 0.76 92 4.7 4.7 1 23 415 438 415 438 0.97

11 12 1e-05 0.0012 20.1 2.1 1 23 444 466 444 466 0.98

12 12 0.00046 0.056 14.9 1.7 1 23 472 495 472 495 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.7e-05	0.0021	19.3	0.4	2	23	147	168	146	168	0.97
2	12	4.4e-06	0.00053	21.2	2.2	1	23	174	197	174	197	0.97
3	12	0.00013	0.016	16.5	0.6	2	23	208	229	207	229	0.97
4	12	3.7e-06	0.00045	21.4	2.0	1	23	235	258	235	258	0.98
5	12	0.089	11	7.7	1.4	2	23	269	290	268	290	0.97
6	12	0.00023	0.028	15.8	2.5	1	23	296	319	296	319	0.95
7	12	0.0065	0.79	11.2	0.4	1	23	326	348	326	348	0.96
8	12	0.00039	0.048	15.1	0.9	1	23	354	377	354	377	0.97
9	12	0.00071	0.086	14.2	0.3	1	23	387	409	387	409	0.98
10	12	0.76	92	4.7	4.7	1	23	415	438	415	438	0.97
11	12	1e-05	0.0012	20.1	2.1	1	23	444	466	444	466	0.98
12	12	0.00046	0.056	14.9	1.7	1	23	472	495	472	495	0.97

Sequence Information

Coding Sequence: ATGGCGCCTCTCGTATTCAACTTTCAGGTATTTCCTGACGATGGTCTGTCCGATCAAATTTGTTGCAATTGTCTCGACAAAGTATATCAATCGTACGCCTTCaagttaaaattcgaaaaatcggaattcaaattgaagaaatcaAAGGATAATAAGAAACGAACGAATATGTTGATAAATTCTTTCAACGAATATGAACACTATACTGAAACGAGTGCTGGAATAATCAAAAGAGAAAAGGGAGTCGATTGTGAAGCATCAAGTGATGAACAATTAGAGCCGATCAATTTACCTGAGATTCTCAACCATGGAACTACAAAACCGGAGGAGATATATATCATACAAGAAGTTAAACAAGAACCTGAAATCGATATAAATATGGACGAATCGGATTTTAACGGAACTGATACAGacgaaaaatatattaagagCGGTATCCAATGTTCTTTTTGTATGAAAACATTCGCGAATAAAGGTAATTTAAAAGTTCATATGATAATTCATTCGGACGAAAGACCGTTTCAATGCGAAATGTGTCCAACCAATTTTCGAAATAAGTACAATTTGAAAATGCATGTGCAAAGAAAACATGTCAGCGACGTGAAGAATACTGAAGAGAATAAATGTACGATTTGTTCGAAACTGTACGCAAGAAGTGCCTACTTAAATCTTCACATGAAACTTCATATAGAAGAAGCGCCATTTAAGTGCGATATTTGTGcaatcaaatttaaaatgaagTCTAGTTTAACGCGACATATGAAAAGGTCACATGACAATGGAACAACAGATTCTAAACAAAGTAAATGTTCGTTATGTTCAgaactatttcaaattaaaaatcgtTTGCGTAGTCATATGAAAGTTCATATTGACGAAAAACCATTTCATTGTGATCTATGTCCAAACAAATTTCGGCTGAAAAGCGAGTTAAAGAATCATATGAAAGCGAACCATCTAACgtatataacaaaatttaaatgtgcGTTATGTTCGAAATTATTTGGAAGTCAACAAACCTTAACACTGCATACGGCTTGGCATAAAAGACAAAGGCAATTTAAGTGTAAAGTTTGTTCACTAAAATTTCCATTAAAATCTAAGTTAATACAACATAGAGAAATGGTTCATGTCGATGAAAAAGcggttacaaaaatatttaaatgtccGCAATGTTCGGAATTATTCGAACGTGAAAGTTTCTTGGATGTTCATCTGAAAATTCATGTAggcgaaaaatattttcattgtgAACTTTGTCCGCTTCAGTTTCGATGCAAGTCGATATTAACGCGACATAGGCAAACGGTACATGCGGAAACTCGAAAGTATAAATGTGAAACATGTTCGAAATCATTCGGGAGAAAATATACGTTACAAatgcatgaaaaaattcatACAGGAGAAAAACCGTTTCAGTGCCAAATTTGTTCGAAAAGATTTCTATATAAGTATAATTTGGCAGATCACACGCAACGAATTCATTGTCAACAAATTCAGGTTGTAGAAGTTCAAACAATGGCTTAG
Protein Sequence: MAPLVFNFQVFPDDGLSDQICCNCLDKVYQSYAFKLKFEKSEFKLKKSKDNKKRTNMLINSFNEYEHYTETSAGIIKREKGVDCEASSDEQLEPINLPEILNHGTTKPEEIYIIQEVKQEPEIDINMDESDFNGTDTDEKYIKSGIQCSFCMKTFANKGNLKVHMIIHSDERPFQCEMCPTNFRNKYNLKMHVQRKHVSDVKNTEENKCTICSKLYARSAYLNLHMKLHIEEAPFKCDICAIKFKMKSSLTRHMKRSHDNGTTDSKQSKCSLCSELFQIKNRLRSHMKVHIDEKPFHCDLCPNKFRLKSELKNHMKANHLTYITKFKCALCSKLFGSQQTLTLHTAWHKRQRQFKCKVCSLKFPLKSKLIQHREMVHVDEKAVTKIFKCPQCSELFERESFLDVHLKIHVGEKYFHCELCPLQFRCKSILTRHRQTVHAETRKYKCETCSKSFGRKYTLQMHEKIHTGEKPFQCQICSKRFLYKYNLADHTQRIHCQQIQVVEVQTMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -