Bmor017818.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638312.1:45603962-45605449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 2.3 9.8 0.1 2 23 60 82 59 82 0.94 2 11 0.00016 0.02 16.3 1.4 2 23 176 197 175 197 0.96 3 11 0.0042 0.51 11.8 0.5 3 23 234 254 233 254 0.96 4 11 0.2 24 6.6 1.7 2 23 270 291 269 291 0.95 5 11 6.4e-06 0.00078 20.7 0.6 1 23 297 319 297 319 0.99 6 11 0.0023 0.28 12.6 3.1 1 21 325 345 325 347 0.96 7 11 0.0083 1 10.9 1.1 1 23 353 375 353 375 0.96 8 11 7.6e-05 0.0093 17.3 0.2 1 23 381 403 381 403 0.98 9 11 4.8e-06 0.00058 21.1 2.2 1 23 409 431 409 431 0.98 10 11 1.9e-06 0.00023 22.3 1.3 1 23 437 459 437 459 0.98 11 11 2.8e-06 0.00034 21.8 0.1 1 23 465 487 465 487 0.98
Sequence Information
- Coding Sequence
- ATGAGTTTACTAGACATTAAAATATTATCGGCGTCTGACTCTGACTTGAATATTAAATATGAAGTCGAAGAAGAGAGTACAACAATCGAGTTTTTGGAAGGTTTCGCAGATGCGGTGACGGCAGTAGAAGAAAAATGTGGCGAAATTGTCGTTTCACAAActggtaattttattttaatttgtactTATTGTAGCGAAAGATTCGAAAACATTGCTGCATTCGGAATACACATGCAATATAAGCACTTCGTTGATAACTTTTGCGACGTGCTTAACAGCACTGAAAACCCTGAACCCGAAAATCACATGCAAATCGAAAACTCGCAAGATTCCAGCAACGAGAGTTTTTGCAGTAATTCCGATTCGGGAACCAAAGAAAATACGAGCAGCAGTGTGAACGAGGTTTTTCTAGAAGACCACACTTCTAGTAACGACAGCTTTTCTAAAAATTTCGATTCGGGAACGAAAAACGATACGAACAACTGTGCCAAACTTAAAAAAGATCTTTTAAAAGTCGACAAGTGGTCTTGCGATATTTGCTCCCGTCAATATATGTCCAAGTCGTCGTTGAGTCGACATCAGAAGCAACATTATAATTCAATGACTTTAACGAACGAGGAAGACGTTGCAGCGGCAACCGATCACAACGAAACACTTGAAAACAAGACGACTACTTCCGAAGAAAAACTGAATTTGTTATGCGATCTTTGTGACCGGCAGTACTCATCGTTAGTGCAATTTAAAAAACACGCTACGATTCACAGTCCGTTAATACCGATCGTACTAAAAGAAGATCCGACCTACTTAAAATGCCGGTATTGCTTCGAACAATTTTCGAGTAGACTCGAAAAACTTAAGCATGAACGCGGTCACGCCCGAGACGGACGCTACAAGTGCCCGCACTGTCCGAAAGCATTTCGTGGTAACGGAGATCGCGAAATGCACATAAATACGCACACAGGAAAACGTCCTTTCAAGTGTCCTCATTGTCCGAGTGCATTTGCTGCAAAGAATTACCTAAGACAACACATTCGTTGCCATCAAGATATCCGGAAGTTCGATTGCGAATATTGCGGCAAGCAATTTCTTCGAAAAATGGATCGTGATATTCATCTGCGACGACATACCGGCGAGAAACCGTATCAGTGTGAGGAATGCGGAATGAGCTTTATGGTTAGCGGTCTTTTGTATCAGCATCGAATTCGACACACTCAGAATCGATCACATCAGTGTGATGTTTGCGACAAGAGCTTCTTCTCGAGACAGCAACTACAATCGCATCAAATTGTTCATTCGAACGATCGTCCGCATAAATGCAACGAGTGCGGAACTTCTTTTCCTCGAAGAAAAACGCTACTGGCACACGTGAAAATCCATTCGGATATAAAGGAGTACGTTTGTAATATTTGCGGTAAAGCATTTGCACAAGCTGCTGGCTTGTACTCTCATAAGAAATCACACGGAGAGAAATTAGTTGGAGCAAGTTAA
- Protein Sequence
- MSLLDIKILSASDSDLNIKYEVEEESTTIEFLEGFADAVTAVEEKCGEIVVSQTGNFILICTYCSERFENIAAFGIHMQYKHFVDNFCDVLNSTENPEPENHMQIENSQDSSNESFCSNSDSGTKENTSSSVNEVFLEDHTSSNDSFSKNFDSGTKNDTNNCAKLKKDLLKVDKWSCDICSRQYMSKSSLSRHQKQHYNSMTLTNEEDVAAATDHNETLENKTTTSEEKLNLLCDLCDRQYSSLVQFKKHATIHSPLIPIVLKEDPTYLKCRYCFEQFSSRLEKLKHERGHARDGRYKCPHCPKAFRGNGDREMHINTHTGKRPFKCPHCPSAFAAKNYLRQHIRCHQDIRKFDCEYCGKQFLRKMDRDIHLRRHTGEKPYQCEECGMSFMVSGLLYQHRIRHTQNRSHQCDVCDKSFFSRQQLQSHQIVHSNDRPHKCNECGTSFPRRKTLLAHVKIHSDIKEYVCNICGKAFAQAAGLYSHKKSHGEKLVGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202926;
- 90% Identity
- -
- 80% Identity
- -