Basic Information

Insect: Beris morrisii
Gene Symbol: pol
Assembly: GCA_951812415.1
Location: OX638311.1:80959892-80964762[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.7e-05 0.011 17.1 0.8 1 23 361 383 361 383 0.97

2 15 5.5e-05 0.0067 17.7 0.6 1 23 389 411 389 411 0.97

3 15 0.00036 0.044 15.2 0.2 1 23 520 542 520 542 0.98

4 15 0.0034 0.41 12.1 0.7 1 23 548 570 548 571 0.96

5 15 1.8e-05 0.0022 19.3 3.8 1 23 598 620 598 620 0.98

6 15 0.78 95 4.7 0.2 1 23 632 654 632 654 0.91

7 15 0.1 12 7.5 0.3 1 23 660 683 660 683 0.87

8 15 0.5 60 5.3 1.0 2 19 691 708 691 709 0.95

9 15 0.00012 0.015 16.7 5.9 1 23 718 740 718 740 0.96

10 15 0.011 1.3 10.5 0.6 2 23 746 767 745 767 0.97

11 15 1.1e-05 0.0013 20.0 0.3 1 23 775 797 775 797 0.98

12 15 0.0021 0.25 12.8 0.2 3 23 805 825 803 825 0.97

13 15 6.4e-05 0.0077 17.5 0.5 1 23 831 853 831 854 0.95

14 15 0.048 5.8 8.5 0.2 1 23 868 890 868 890 0.97

15 15 0.015 1.9 10.1 1.6 1 23 1277 1299 1277 1299 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.7e-05	0.011	17.1	0.8	1	23	361	383	361	383	0.97
2	15	5.5e-05	0.0067	17.7	0.6	1	23	389	411	389	411	0.97
3	15	0.00036	0.044	15.2	0.2	1	23	520	542	520	542	0.98
4	15	0.0034	0.41	12.1	0.7	1	23	548	570	548	571	0.96
5	15	1.8e-05	0.0022	19.3	3.8	1	23	598	620	598	620	0.98
6	15	0.78	95	4.7	0.2	1	23	632	654	632	654	0.91
7	15	0.1	12	7.5	0.3	1	23	660	683	660	683	0.87
8	15	0.5	60	5.3	1.0	2	19	691	708	691	709	0.95
9	15	0.00012	0.015	16.7	5.9	1	23	718	740	718	740	0.96
10	15	0.011	1.3	10.5	0.6	2	23	746	767	745	767	0.97
11	15	1.1e-05	0.0013	20.0	0.3	1	23	775	797	775	797	0.98
12	15	0.0021	0.25	12.8	0.2	3	23	805	825	803	825	0.97
13	15	6.4e-05	0.0077	17.5	0.5	1	23	831	853	831	854	0.95
14	15	0.048	5.8	8.5	0.2	1	23	868	890	868	890	0.97
15	15	0.015	1.9	10.1	1.6	1	23	1277	1299	1277	1299	0.98

Sequence Information

Coding Sequence: ATGGATTTAGTAGGACCCCTTCCTCAGTCAAACGGATACAATTACATCCTAACAATAATAGACAGGTTCACTCGCTGGCCGGAAGCATACCCTTTAAAAGACATGACCGCCCAGACGGTAGCAGAAGCCTTTGTTCATCAATATATATCCCGATTCGGAGTCCCAAGCATAATCAGCACTGATCGCGGAAGCCAATTTGAATCAAAACTATTCACAGAAGTTAACAAAATACTGGGAAGTAGTCGCATACGCACCACCGCGTATCATCCGCAGGCAAACGGTATGGTGGAGCGATTCCATCGTACCCTAAAAGCTTCATTAATGGCCCGCGACAATACAATAAATTGGAGCGAAGAACTATCTCTTGTACTTTTGGGTATCCGTACAACACCAAAAGACACTTTAAACTGCAGCCCGGCAGAATTAGTATATGGAGAAACTCTACGGGTACCCGAAGACTTTCTATGGCCCAGCTTAAACCCCGATGAAACGTGTTCTTCCAATTTTGCTGAACAACTGCGGAATAGCATGCAAAAATTACAAGACAATCTACCAAGACAATCTAAACAAAACAACGCACACGTACCCGACGCCCTCCGAACAGCAGATTTCGTCTTTATTCGTGAAGACAAGTGGGTAGAAGAAATTCCGACTGCTGAGATCGGAAGCGAAGAGATCATAACAATGGACTCGGAAAGTGAAGATATTGTCGAAGAAGCCGAAGAATATCTGGTTGGTGAAGAGATCATATCGGCCGATATGCACGCAATACCCAACAGTTTGGATCAGATTGCAGCCGAAAATTTAATATACATGGCACAAGATGGACAGGTCCAATCAATGGGTGATTTAATTGAAGAACAAGTCGAACAAACGGACAACGCTAACTACAACGAGGAACAGTATTTCGAATGTCAAGTAACCGAAGAGGTCATAACCGATGACTGGGTACAGCAACAGGGCGAAGAAAGGGTTGAAATTCCGGTCGATCAACTCTGCGGTTCGGCCGATTCGCAAATCATTGCCGAAATTGAAGTGCCGTTACCGACGGACCAGGACGAGTACACTTCACTTCGACCGTATCCGTGCGATTTCTGTAGTCGTCGTTTTCGAAAGAAAGTCAGCTTAATGAATCATATGATCGCGCATCAAAACGATCGGCCACACGTGTGTAATTTGTGTGGTGCACGTTATATACGGCGTAGCGATTTACTAAATCATTTAAAGGTTCACGCTCATGTACCCGAACATAGTTTCGATGATATTGACGAAAGTTGTAAGTATGTGGTGCACATTACTGAAATAAAATTAGACCggttgcttgttttttttacagttcTAAATGATCATATTGAACCTAGGCCGACTAGACGCCGTGCTTATTACGAGGAGAAAGAAGAGGATGTAACTCAGAGGACAAGAGCTAAAGCTAGGGTTGGACGCGTCAAACGGAAAGTGAAAATTGAAGATCCGTTCTCTGAACTGGATCATACTATTGTGGAGCCGCAGATGCAGCAACAAGTAGAACAGTATCCGATTACCGATCCCAGAAAACCGTTTGTATGTCAACAATGCGGCATTGGGTTCGCCAGGGAAAAAGCACTATTCTCACATTCTCGGATTCATGGTGGTGATTCGCCATATGAATGCACAGCGTGCAACGAAATGTTTTGGGACGCTAATATGTTGCAAGATCATCAACGAACACATCACTTTGAAGCCAGTAATTCTGAATACGAGCCGGAAATTGATGAAGAAACTGAGTCCGATAATGATTCAAAGTATGGCGAGTTTTATTGTAATGTTTGCGGTATGTCGTTTCATCGTCAGGATTTGCTAAAGCGTCACTCTAAGACGCACGTCAAGAAGGAAGTCTATGAAAGCGATTCACGCCATTGTTGTAACGTATGTGGCGATACTTTCGAAGAAGCGTTAGATTTACTGGCGCATGCTGAAGCCCATGCTCGGTTTCAACCGTTCAAATGCACCCTATGTGGCGAAACATTCCTGGAGGAGGCTACAATAAAAAAGCATTTAAGCAATGTCCACTCGGCCGAAATGAATGCAAATTCATGCAAGCTATGCGGAAAACTTTGCCGTGACGGACGATCATTAATGAAACATGCGTGGGACCATTCGCGCGAAAAGAATCACTCATGTTCAAAATGTGGCAAAActtttcataataaagcaagACTTAAGCGACATATGGTCTCCCATCGCAATAAATCCGTTCGATGTGACGTGTGCAACGAAGAATTCCCCGACGGTAGGTCACTGATGAACCACAGGCACTCGCATACCAATTCTTCCGGACGTCTGTTTCCGTGCAATGAATGCGGTAAAACATTCGGTTCGCGAAGTTCTCAGCAAATTCATGTTCGGATTCACACTGGCGAACGTCCATATGGTTGTCGGTACTGTTATAAAGCTTTTGCAGATGGGGGAACGCTTAGGAAACACGAACGGATCCATACAGGCGAAAAGCCTTATGCCTGTTCTGTTTGTCCACGCGCATTTAACCAAAGAGTTGTTCTCCGCGAACACATCCGATCGCATCATTCGGCACCCGATACAAAACGCGGCACTGCCTTGACGCCATACTATTGTAACGTTTGCTCTGATTTGTTTTCGCAATCGATAGATTTAATTCAACATTTGATTCAGCACAGCGATATGAATACAGCCATGCAACGGCAACCAATTACTGGACCTCGAAAATACAAACGGCGAAGAAAGCTTAAACCGCACGAGCTGGAGCGCTTGCATACTGATAAGGCGAACAATACTGATGTTGAAAATTCCGATTTGGATATGGGAAATGTGGACAATATGCTTGGTTTCGGAAAAAGTAAACGGTCGCGATTTGATACCACAGCCTCGTCTTCATCAAACGCTCTCTTAATACCGCAACAAtcaaaccaaaatcgaaaatgtTCCGCCGGTTCAGAAAAAGTTGTAAGCTGGCAGCAGAAATTAATGACAACGGCAAATGAAGATGCGTATTCCGTTTTGCAAAATCTCGAAAATGAGCTTCAAAACATCGAACCACTAGTTGTGAATAATTCAAGTGTAGCAACAGTCGTCTCAACGGCATTATCAAAAAGTCGAAGTACGGCACGTCGTCGCATAACCAAACAGGAAGCCGAAAAACCCTCGCGACCGAAAATGATCCACACACAGAAAACTCGAGTCGCTATCGAAGACGGCAAACGTAAAACCAAGACAATGATAACTCGTACTAAACCAACCGAAATCGACGAACAAGATTTCCAGCATTTCGAACGCCCAAAAAGTGAACGCCATACTGACTACGACTTGCTAATCTCTGCACCAATCACGGTCAGACATTCTAGTCACCATGATATCAAACAAGAAGAACCCGCACGTAGTGATCTGTTTGACGCACAGCTACTTCTTGAGGCGGCATCTATGCGACGCGAACTGGAAAAATACAATCCAGATATTGTGAACGATCTGGAAGAGATTCTTCGTTCGCCGGTCAAACAGAAACCGATACCCTCGCCACAAGCCATTTTATCCAATCGCCATGATAGCCTGGACGATCAGTCATCCGAATTAATAGAAGGAAGCTGTCCGGATGACGATGTTCGTCGCTCGACTCGAGTCCGGCGTCctgcacaaaataaaaaatatctcgAATTCGAAACTTCGCGGAAACCGTCATCATATCGCCATTCATCTTCGTCAAAAACTAAACTGAAGCAAGAGAAAGTTACCATCAAAGTGGAAAAGTTGGACACTCCCAGCGAAGATGAACAACCGGAAATAGTTACGCCCGAAGCAACGACCAGAAAAGAGCATTACTTTCAGTGCGAAATGTGTTGTGCCACATTTTCGGATCGTAGACAACTTCTTATGCACGTTAACATACATATTTAA
Protein Sequence: MDLVGPLPQSNGYNYILTIIDRFTRWPEAYPLKDMTAQTVAEAFVHQYISRFGVPSIISTDRGSQFESKLFTEVNKILGSSRIRTTAYHPQANGMVERFHRTLKASLMARDNTINWSEELSLVLLGIRTTPKDTLNCSPAELVYGETLRVPEDFLWPSLNPDETCSSNFAEQLRNSMQKLQDNLPRQSKQNNAHVPDALRTADFVFIREDKWVEEIPTAEIGSEEIITMDSESEDIVEEAEEYLVGEEIISADMHAIPNSLDQIAAENLIYMAQDGQVQSMGDLIEEQVEQTDNANYNEEQYFECQVTEEVITDDWVQQQGEERVEIPVDQLCGSADSQIIAEIEVPLPTDQDEYTSLRPYPCDFCSRRFRKKVSLMNHMIAHQNDRPHVCNLCGARYIRRSDLLNHLKVHAHVPEHSFDDIDESCKYVVHITEIKLDRLLVFFTVLNDHIEPRPTRRRAYYEEKEEDVTQRTRAKARVGRVKRKVKIEDPFSELDHTIVEPQMQQQVEQYPITDPRKPFVCQQCGIGFAREKALFSHSRIHGGDSPYECTACNEMFWDANMLQDHQRTHHFEASNSEYEPEIDEETESDNDSKYGEFYCNVCGMSFHRQDLLKRHSKTHVKKEVYESDSRHCCNVCGDTFEEALDLLAHAEAHARFQPFKCTLCGETFLEEATIKKHLSNVHSAEMNANSCKLCGKLCRDGRSLMKHAWDHSREKNHSCSKCGKTFHNKARLKRHMVSHRNKSVRCDVCNEEFPDGRSLMNHRHSHTNSSGRLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRYCYKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSAPDTKRGTALTPYYCNVCSDLFSQSIDLIQHLIQHSDMNTAMQRQPITGPRKYKRRRKLKPHELERLHTDKANNTDVENSDLDMGNVDNMLGFGKSKRSRFDTTASSSSNALLIPQQSNQNRKCSAGSEKVVSWQQKLMTTANEDAYSVLQNLENELQNIEPLVVNNSSVATVVSTALSKSRSTARRRITKQEAEKPSRPKMIHTQKTRVAIEDGKRKTKTMITRTKPTEIDEQDFQHFERPKSERHTDYDLLISAPITVRHSSHHDIKQEEPARSDLFDAQLLLEAASMRRELEKYNPDIVNDLEEILRSPVKQKPIPSPQAILSNRHDSLDDQSSELIEGSCPDDDVRRSTRVRRPAQNKKYLEFETSRKPSSYRHSSSSKTKLKQEKVTIKVEKLDTPSEDEQPEIVTPEATTRKEHYFQCEMCCATFSDRRQLLMHVNIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00324681;
90% Identity: -
80% Identity: -