Bmor015695.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:152048378-152049778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 2.5 9.7 0.5 2 23 25 46 24 46 0.95 2 12 0.017 2.1 9.9 9.4 1 23 137 159 137 159 0.99 3 12 2.1e-06 0.00025 22.2 6.4 2 23 165 186 164 186 0.97 4 12 0.0046 0.56 11.7 3.5 1 23 192 214 192 214 0.98 5 12 5.2e-06 0.00063 21.0 5.0 1 23 220 242 220 242 0.98 6 12 9.2e-05 0.011 17.0 1.4 1 23 249 271 249 271 0.97 7 12 1.3e-05 0.0016 19.7 7.7 1 23 277 299 277 299 0.98 8 12 8.8e-05 0.011 17.1 2.5 3 23 307 327 305 327 0.97 9 12 0.0021 0.26 12.8 1.4 1 23 335 357 335 357 0.97 10 12 3.5e-05 0.0043 18.4 0.4 2 23 364 385 364 385 0.96 11 12 2.5e-05 0.0031 18.8 4.9 1 23 393 415 393 415 0.98 12 12 1.6e-06 0.00019 22.6 1.4 1 23 421 445 421 445 0.94
Sequence Information
- Coding Sequence
- ATGGAAGTGGGTCGTTGTGTGCAAGCTATCAAACGACTATTGTCCCTTTTCGACAGAAAAGCCCCGGCTCTTGAATGTGATAGTTGTACTTTAATTTTTAGCAATATCAACTCACTTTTCAAGCACAAAATCAATCACATTAAATATATGAAAAGGAAACAAAACACAAAAGCAAGCTGCAACATTATCGAAGCAGAGCCTAATGCAATTGATAGCAGCCTGCCTGGCGAAACAGAAAATAGAATTGATCAATTCGATTATTTATCGTTCTTCGACAACGAATACTCGTGCAACGATATTCGGGATGTTATTTATAGTCAATTTGAAGATATCGATTTCACAACCGGAGACATTAAAAGCGAGTCGAAGAAAGCACGGGCACGCGGCAAACAATACGAAGGGGGTCCATTTCAATGCTGTTATTGTTCGAAGGAATTTTTGCGAAGATGCAATTTGTTCACACATATGAAACGGCATGAAAACGCCGATCTGAAATGTGAACATTGCGGTAAACACTTCAACACTCGGGCTCATTTGAATCAACATTTGCGAATACATTCGAATGATCGGCCGTTTAAATGTGAGTTTTGCCAGCGAGAGTTTCTAAGTAAGCGGAATTTAACGCTACATCGTTATACGCATACGGGCGAAAAACCCTATCCTTGCGATAATTGCGAAAAGAAATTTTCGCGACCGCATCAATTGAAATTGCATCAGCGACATCATAGTGACGAGGTGGTCGGCTTCAAATGTGACTTGTGTCCGAAAGTTTTGAGCAATAAAAATCATCTTGCGACCCATAAACTTCTGCATTCGGGCGAACGACCGTTCAAATGTGATTTATGTCCGAAAGATTTCAAAACAAAATCACATCTTAAACATCATCGATTTACTCATACTGGCGAACGGCCGTACGGTTGTGACATGTGCAACAAGAAATATACCCGACCCGGTAAATTGTGTAAGCATACAAATATTCATAATGTTGGCAAGGAGCGACCGCATAAATGCGATCAATGTCCGAAAGCATTTCTACTTCGATCGCAACTGAAAGAACATCTATACATTCATACCGGCGAGAAACGAAATGTGTGTGCTACGTGTGGCGAAGGATTTGTTCGACGATCGTCGCTatcgaaacataaaaaaatccaTGAACCGGGCGATATGCGACCGTACAAATGTGATTTGTGTCCGAAGGGATTTATTACAAAGACCCATTTGAAGCATCATCGCTACATTCATACCGGTGAGAATCCCTACCTGTGCCCGAAACCGAATTGTGATAAGAGATTTCGGGAGAGGAGCAATCTTAATAGGCATTTGAAACGACATGCTAAGAACGAAGAGAACGAAAACAATGATCTAAAAAAGAAGAGTAACAGTACTGACGATTCGTAA
- Protein Sequence
- MEVGRCVQAIKRLLSLFDRKAPALECDSCTLIFSNINSLFKHKINHIKYMKRKQNTKASCNIIEAEPNAIDSSLPGETENRIDQFDYLSFFDNEYSCNDIRDVIYSQFEDIDFTTGDIKSESKKARARGKQYEGGPFQCCYCSKEFLRRCNLFTHMKRHENADLKCEHCGKHFNTRAHLNQHLRIHSNDRPFKCEFCQREFLSKRNLTLHRYTHTGEKPYPCDNCEKKFSRPHQLKLHQRHHSDEVVGFKCDLCPKVLSNKNHLATHKLLHSGERPFKCDLCPKDFKTKSHLKHHRFTHTGERPYGCDMCNKKYTRPGKLCKHTNIHNVGKERPHKCDQCPKAFLLRSQLKEHLYIHTGEKRNVCATCGEGFVRRSSLSKHKKIHEPGDMRPYKCDLCPKGFITKTHLKHHRYIHTGENPYLCPKPNCDKRFRERSNLNRHLKRHAKNEENENNDLKKKSNSTDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202881;
- 90% Identity
- iTF_00202881;
- 80% Identity
- -