Bmor022021.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Beris morrisii
Gene Symbol
-
Assembly
GCA_951812415.1
Location
OX638312.1:104867647-104870410[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.5 1.8e+02 3.8 0.2 3 17 65 79 63 80 0.90
2 16 0.12 14 7.3 1.6 1 21 209 229 209 230 0.92
3 16 0.051 6.2 8.4 0.5 3 23 238 259 237 259 0.96
4 16 0.00042 0.05 15.0 2.1 3 23 267 287 265 287 0.95
5 16 0.00053 0.065 14.6 0.6 1 23 293 316 293 316 0.95
6 16 0.0068 0.82 11.2 4.3 1 23 321 343 321 343 0.97
7 16 0.0013 0.16 13.4 9.8 1 23 349 371 349 371 0.99
8 16 2.1e-05 0.0025 19.1 2.9 1 23 377 399 377 399 0.96
9 16 1e-05 0.0012 20.1 3.9 1 23 405 427 405 427 0.98
10 16 7.4e-09 8.9e-07 29.9 0.9 1 23 433 455 433 455 0.99
11 16 0.00074 0.09 14.2 2.8 1 23 461 484 461 484 0.95
12 16 0.00023 0.028 15.8 1.6 1 21 527 547 527 549 0.95
13 16 7.4e-05 0.009 17.3 0.3 1 23 555 578 555 578 0.95
14 16 6.8e-06 0.00082 20.6 1.0 1 23 584 606 584 606 0.98
15 16 2.7e-05 0.0033 18.7 2.0 1 23 612 634 612 634 0.99
16 16 0.044 5.3 8.6 0.1 1 23 640 662 640 662 0.98

Sequence Information

Coding Sequence
atgaaggaaaaacaAGTGGTTGAATTGCAAAGGACATGCCGTACCTGTTCCGATGTTACTACAGAACAAAAACACTTAACGCCGCTTTTTGAGACGTCGGAAACCGAAGAATCCGTGCCGAAGGATGTCTTGGATGAAGTGCTTTTCttcaaattaaatATCTCGCTGAACGATGGCCTCCCTCAACAAATCTGCACCAAGTGCCTGGAAGCATTTTCGACCATCAGTCAATTTCGAACACGATGTACCGAAGTTCAGCAGGAACTGATCGCTTTCTTTCGACTTCATCCCGTTGATATGAAACTGGAGGATACCGATAATTATATCGAGTTTGAATTTATGGAAGTAGATTCCGAGGGAAGTGCCACGGAAGCGAATGCACACAGCAGCCCTGTTTCAGAATTTACCATTGAACCTATGCCTGCAGAAAGTACTAATGATTCAGAGGACAATAAACATGAAGAATACGATGGTTTTACCTATGACCTAattaagaatattgccgacaatGGCGATTTTGAGTCAATGGTCAGTAACGATGAGCGAACACTGCATAACGCTGAGCCTGTTGACGACATAGATCCTGTTGAAAATGTTGTCTCAGATGAAATAGAAATCGAGCTATTTACTTGTACCTTTTGCTCTAAAGACTTTCATAGTGCCCTGAAACTATCGAACCATACAGCAACGTGTTTGCTCGCTCCGCCACTCTGTCGCTACTGTAAACTAGAATTTGATACGATTGAAACATTGGAAACCCACGTGAAACAAAACCATCCAAAAGATCGTCCACATTTATGTCCGATTTGTCAAAGATCCTTCAATAGCGTATCGAATCGTAATACACATTTACAATCGCACAATCAACACGACATGTTCCGATGCGAAATTTGCAATCAGGGATTCAAGAGCAAGGTGTACGTAGCGAAGCATAAGAAAGCCGTTCACGAGACTGGACATCACATCTGTTCGCTGTGCAATCAAACTTTTACCAATACGCTAAAGTACAAGTATCATATACGATCGCATAATCCGATCAAAAAATACAAGTGCAAATATTGCGAGAAGACTTTCATGCAACATCATCATGTAACGAACCACGAACGAACGCATACCGGATTAAGACCGTTTTTATGTAATATTTGCGGAAAGGatTTCAAACAGGAGTGTAATTTTAAACTGCATTTACGTGTGCATAGCGGGGAGCGGCCTTATGTTTGCAGCATTTGCGGCAAAAATTTTGTTCAACACAGCACTTTCGTTATGCATATGCGTCATCATAACGGCGTTCGCCCCTATCAATGTGAAATTTGTGGAAAGAAGTTCATTCAGAAATCAACTCTTAATGTTCATTTGCGGACACACACTGGCGAAAAACCATACAAATGCGATTTGTGCGAGAAGGCGTTTATACAAACGCACCAACTTAAATACCATAAATACTCAGCACACAACGGACCACCGGTtcctataaagaaaaaaataaaatcgtctAGCAGCACAACGGATACAAATGATCAGTCACTTGATGAAAGCGTCGCGAACAAATCAACAGAAATAATAACTTCCGGTCATCCTTATACTTGTCCGATATGTTCGCGCGGCTTTAAACTTCCTTCGTCATTAACATCGCACGTAAAATGTCACTCGGAAGAGAGAAAATTCATTTGTACCGAATGCGGAAATCTATTCAAACGTGCCGAACATTTACGGATTCATATTAATGGTGTCCACTTGAAGCGCAAACCGTATGCATGTGATTATTGTAGTAAAACATTTTCCCAATCCGGCGATAGAAATATCCATATGAAAAGTCACACCCATGAAAAACCGTACCAATGCACATTTTGTAAGAAAGGATTCAAACTGCAAAAGTCCTTACGCGCCCATGAACGAATTCACACGGGTGAGAAGCCCTTTACCTGCGAGATTTGCGCTTCCGATTTTATTTCGTACAACGCTCTGGCAATTCACACGATGAAGCATACAGCTGAAGAAAAGGAAATGGTTAAAGATAAAACCCTACTGGAAGTACAAAATGCaattaaaagtgaaaatttgcCAATGGAACCGTCAATCGTAAGAATGATTATGGAATCATCACTTGAATACAATCATCAATCGATTTTAATCGTGCCATCTGCGAAAAgtttagaaaattga
Protein Sequence
MKEKQVVELQRTCRTCSDVTTEQKHLTPLFETSETEESVPKDVLDEVLFFKLNISLNDGLPQQICTKCLEAFSTISQFRTRCTEVQQELIAFFRLHPVDMKLEDTDNYIEFEFMEVDSEGSATEANAHSSPVSEFTIEPMPAESTNDSEDNKHEEYDGFTYDLIKNIADNGDFESMVSNDERTLHNAEPVDDIDPVENVVSDEIEIELFTCTFCSKDFHSALKLSNHTATCLLAPPLCRYCKLEFDTIETLETHVKQNHPKDRPHLCPICQRSFNSVSNRNTHLQSHNQHDMFRCEICNQGFKSKVYVAKHKKAVHETGHHICSLCNQTFTNTLKYKYHIRSHNPIKKYKCKYCEKTFMQHHHVTNHERTHTGLRPFLCNICGKDFKQECNFKLHLRVHSGERPYVCSICGKNFVQHSTFVMHMRHHNGVRPYQCEICGKKFIQKSTLNVHLRTHTGEKPYKCDLCEKAFIQTHQLKYHKYSAHNGPPVPIKKKIKSSSSTTDTNDQSLDESVANKSTEIITSGHPYTCPICSRGFKLPSSLTSHVKCHSEERKFICTECGNLFKRAEHLRIHINGVHLKRKPYACDYCSKTFSQSGDRNIHMKSHTHEKPYQCTFCKKGFKLQKSLRAHERIHTGEKPFTCEICASDFISYNALAIHTMKHTAEEKEMVKDKTLLEVQNAIKSENLPMEPSIVRMIMESSLEYNHQSILIVPSAKSLEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00202873;
90% Identity
iTF_00202873;
80% Identity
-