Bmor022397.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Beris morrisii
Gene Symbol
-
Assembly
GCA_951812415.1
Location
OX638312.1:113518333-113524198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.3e-05 0.0089 17.4 1.8 2 23 140 162 140 162 0.95
2 16 9.9e-05 0.012 17.0 0.8 2 23 167 188 166 188 0.97
3 16 1.1e-05 0.0014 19.9 0.5 1 23 193 215 193 215 0.97
4 16 0.00097 0.12 13.8 0.7 1 20 221 240 221 244 0.90
5 16 0.00029 0.035 15.5 0.1 1 23 252 274 252 274 0.98
6 16 5.4e-06 0.00065 20.9 1.9 1 23 281 303 281 303 0.97
7 16 2.3e-05 0.0028 19.0 3.7 1 23 309 331 309 331 0.96
8 16 0.0004 0.048 15.0 2.5 1 23 337 359 337 359 0.97
9 16 0.00045 0.055 14.9 0.1 1 23 533 556 533 556 0.97
10 16 0.0097 1.2 10.7 5.3 3 23 562 582 561 582 0.94
11 16 7.2e-07 8.7e-05 23.7 2.3 1 23 587 609 587 609 0.99
12 16 0.0057 0.69 11.4 1.0 1 23 616 638 616 638 0.94
13 16 0.0034 0.42 12.1 1.0 1 23 644 666 644 666 0.96
14 16 0.17 21 6.8 1.7 2 23 673 694 672 694 0.97
15 16 8.7e-08 1.1e-05 26.6 2.6 1 23 700 722 700 722 0.98
16 16 0.0003 0.037 15.4 0.9 1 23 728 751 728 751 0.98

Sequence Information

Coding Sequence
ATGGAATTCCAAAACGAAGGTAGCTCCTTCAATCGCTCGTATCCGAACAGCTAtcgaaaaatgaataaaaagcaTTCCGGCGTGAAATACATAAAAGATGAATATACCGATGATGTTGTATCTTTATCGGACGACGAATCAATTGATGAAAATGACCCAAATGAAAATCATTTTCCTGTGATGAACGAAGATGAACATGAAACATATCAAATAGAAATCtccgatgatgatgatgatgatgacgaaaACGAATATCTCGACTCGCAATATAATTCAAATGGTGCCTTTCAAATTTTAGACTATAATACAATTAAGAATAACTCGGAAATCGTTAGCGATTCACAGTCATCATTCCTAATGCCGGAGAACAGTAACGATTATAGTTCGCAATCCGAtgataattttccattttcacgaCAATGTCCACAATGTTCGCAAATGTTTCATACAGCAAGCGAATTGAAAAAACACATAAAAGCTCGACATACCAGAGGATTAAAGTGTAATATATGCAAAAGAGTATTGAAAACTCACGGCAGCTTAGCAGCGCATATTTCGACACACGTGCCACAATTCTATCCGTGTCCAATATGCGGTTTCAAAGTGAAACAACGAAAATATCTCACCAAACACATGGAATTGCATAGTGGCAATAAAACCTATCAGTGTGAACTTTGTGATCAAACATTTTATACATCTGTCGATTTACGTGGCCATAACTTTTTATCTCATGCCGTGACTAAAGATTCGCCTTATAAATGTGATATATGTGGAATACGGCTTCCAAATCAACGAGGACTGAATGCGCATAAAGCGAAACATAATACGGTAGTTCGAAATCATATTTGTACCGTATGTAATAAAGCGTTTCGTGATAAAACTGGACTAAATACACACTATCGAATTCATACAGGCGAAAAGCCACATACGTGTAAATATTGTCGTAGAAGTTTTACCACACAATACAGTTTGAAGATGCACGTTGCCATCCATACGAACGAAGAATTTCATAAATGTGCTATTTGTCAAACGAAATTTCGTTATCGTAGCGCTATGCTCAAACATATGGAACTTCATAGAGACATCTATTGTAAGCTGCCAACTCAAGTGGAACCAAATCGGAATCGCCCGGTATTGACGAAAataTTCTACAACGATCGGCTGCCAGAAAAAATCTGTTCGTCATGCCTCGAGGAAATTAAACGTGCGCAATCGTTCAAAATAAAATCCCAAAATGCTGAAAAGACATTGCTAGACTACTTAAATAACATTGCAATTGACGAATCCGTACCGGTGCATGGTATTTGCGTTAAGGAAGAAATGTTGGAAGATTATGCAATTCATAATTCGGATATTGAAAATAACTCCTTAGACGAATGTTCTTCATCCAATGATCAACATAATATCCAAGAAGAAGTATCTCAGGCATCAGACGACAATACCGAAACGACAGGAGAGGCATCGGTTCTGAGATATGATATCTATGAGTGCGGTAACAGTCTCCAGCAATCGACTGGGCAAGAGCCGACAACGACTACCTCCAAACCTCATAATATGGTTGATCCGAACCTTGAAGGACTAGACGAACTCAAAAACTATAAATGTCCGAAATGTTTGGAAATATTTGATAATCCTAAAGTCCTACAAACCCATATTTTAGTCAGTCATACGGAAGAACTATTGTGTAATGTGTGCGACAAAGttttaaaaaacCACTCTCAATTGCGAAAACATTGCATGCGTCATGTACCATTGCTCTATTCGTGCAATCAATGcgataaaaaattcaaacagTTGGACTATCTCAATCTTCATATTCGTCGACATTCCGAAATCGAAAAGAAGTACAAATGTAGCTTTTGCGACAAACTATTTCTCAATTCGAACGAATTGAAAATTCATATGCCGACACATTCGGCCGATTGTCCTTTCGTCTGCGATATATGCGGCTTGAAATATAAACGGAAAGATGCACGCGATACGCATCGAACGAAACATACCGGAGAGCGTAGCATACAATGTGATATTTGTTTGAAAATCTGTTTGTCCAGCTATAAATTGAGCGTTCATCGAAGATCACATACCGGCGAAAAACCGTTTGAATGTAAATATTGTGATAAAAAGTTCACACAGAGAAGCAGTCTAACGGTACACACACGAGTTCATACGAACGAAAGACCATTCGTGTGTCCGTACTGTTCGTCAACATTCCGACAAATGAGCACGATGAGTGAGCATTTGAGACGAGTACATAAGGATCAACCGTGCGTTCCAAAAAAATCAGTAAATGCAAGCTAA
Protein Sequence
MEFQNEGSSFNRSYPNSYRKMNKKHSGVKYIKDEYTDDVVSLSDDESIDENDPNENHFPVMNEDEHETYQIEISDDDDDDDENEYLDSQYNSNGAFQILDYNTIKNNSEIVSDSQSSFLMPENSNDYSSQSDDNFPFSRQCPQCSQMFHTASELKKHIKARHTRGLKCNICKRVLKTHGSLAAHISTHVPQFYPCPICGFKVKQRKYLTKHMELHSGNKTYQCELCDQTFYTSVDLRGHNFLSHAVTKDSPYKCDICGIRLPNQRGLNAHKAKHNTVVRNHICTVCNKAFRDKTGLNTHYRIHTGEKPHTCKYCRRSFTTQYSLKMHVAIHTNEEFHKCAICQTKFRYRSAMLKHMELHRDIYCKLPTQVEPNRNRPVLTKIFYNDRLPEKICSSCLEEIKRAQSFKIKSQNAEKTLLDYLNNIAIDESVPVHGICVKEEMLEDYAIHNSDIENNSLDECSSSNDQHNIQEEVSQASDDNTETTGEASVLRYDIYECGNSLQQSTGQEPTTTTSKPHNMVDPNLEGLDELKNYKCPKCLEIFDNPKVLQTHILVSHTEELLCNVCDKVLKNHSQLRKHCMRHVPLLYSCNQCDKKFKQLDYLNLHIRRHSEIEKKYKCSFCDKLFLNSNELKIHMPTHSADCPFVCDICGLKYKRKDARDTHRTKHTGERSIQCDICLKICLSSYKLSVHRRSHTGEKPFECKYCDKKFTQRSSLTVHTRVHTNERPFVCPYCSSTFRQMSTMSEHLRRVHKDQPCVPKKSVNAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-