Bmor013892.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:103516235-103518453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.28 34 6.1 0.6 1 23 21 43 21 43 0.95 2 21 0.43 53 5.5 1.2 1 23 108 130 108 130 0.97 3 21 2.3e-05 0.0027 19.0 1.0 2 23 136 158 135 158 0.96 4 21 0.0011 0.14 13.6 0.5 1 23 165 187 165 187 0.97 5 21 0.0048 0.58 11.6 0.6 2 23 193 215 193 215 0.95 6 21 0.0003 0.037 15.4 2.9 1 23 222 244 222 244 0.98 7 21 0.00052 0.063 14.7 0.5 2 23 250 272 249 272 0.95 8 21 2.7e-05 0.0033 18.7 1.5 1 23 279 301 279 301 0.95 9 21 9e-05 0.011 17.1 1.4 2 23 324 346 323 346 0.95 10 21 9.5e-06 0.0011 20.2 0.4 2 23 353 374 352 374 0.96 11 21 0.013 1.5 10.3 0.0 3 23 381 402 380 402 0.93 12 21 4.2e-05 0.0051 18.1 0.5 1 23 409 431 409 431 0.98 13 21 5.6e-07 6.8e-05 24.0 0.5 2 23 437 458 436 458 0.97 14 21 0.0018 0.21 13.0 3.9 1 23 465 487 465 487 0.97 15 21 0.0001 0.012 16.9 0.3 1 23 492 515 492 515 0.96 16 21 9.7e-07 0.00012 23.3 0.2 1 23 522 544 522 544 0.98 17 21 4.4e-05 0.0054 18.0 0.7 2 23 550 572 549 572 0.95 18 21 5.8e-06 0.00071 20.8 2.6 1 23 579 601 579 601 0.98 19 21 6.7e-05 0.0081 17.5 0.2 1 23 606 629 606 629 0.96 20 21 1.5e-06 0.00018 22.7 1.5 1 23 636 658 636 658 0.97 21 21 2.5e-05 0.003 18.8 2.2 2 23 664 686 663 686 0.95
Sequence Information
- Coding Sequence
- ATGTCTATCAAGGCCAAGGCTCAACCTGAACCTAGTGTTCGTCTTACCTGGAATGACATTTACAAATGCAGTGATTGCAATGTTGAAAATTCGGATTACATTCAATATGTTCGACATAGAATGCTGCATTCGAAACTCTCTACAAATAAATCAAAAGCACCATATTCGAATAACTTGGCTCTTTGCCCTCTTGTCCACGAAAAAGGCAACGGAAAAAAGAACGCGTCGAATAGGAAGCATATCCTGTTCAGGGACAGCCTAAGCGAAAACTTGTCGAAGGAGGAGGCGAAATGGAATGAATTGCGGCTAGGCCACCTGAAACATCAGTGTGAaatatgtatggtgttattctCGAGCTTTGCTGCCTACAAGCTTCACTTGAAGAACCACACAGGGTCTTGTTTATCGTGTCCGCATTGTCCAAAGAAATTCACTCGTCCCTATCGCATGGAAGAACACATCCAGCGAGTTCATATGAAATTTTCACTCGGATATTCATGCGATATTTGCAATAAGGTTTACAGCTGGAAACAGTCGCTTCTCGCTCACAAAAAACTCCATACAGACGAATGTCCTAGCTGTCCGCACTGTAATATAAAATTCATCACTATTACAAAAGTCAACGCTCATATTAAACTAGTTCACGAAAGAAAAGGTCCAATTTTTCGTTGTGATATATgcaaaaaggaatttttcaaGGAAAGAAACTTCATAACTCATAAACGAATTCATACCGATGAAGGTTTGTCATGCCCGCATTGTGATCGGAAGTATTTACGTCGTAGTGAACTTAACGATCACATTGAGATAATTCATATCAATAAGGGAAAAGGATTTTTGTGTGATCATTGCCCGAAGGTGTTTTCCGGTCGACAATCTTTGAAACTTCATTTGAAAATACACAGCGGGAAATGTGAAATATGCACTCATTGTGGAAGTGTAGAGTGCGAACAGAAAAAACAATGCCTTATATGTCCGCATTGTTCGAAGAAATACATACGATTGTCAAAACTTAAAGAACATATTGAAAAAATGCATTGCAGTCAAAGTACAGTTCCGTGTGAAATATGTTCGAAGCCATTTGGAACATCAAGCGAACTACAACACCATAGGAACGTACACGAAGAGGAATGCTCATTGTGTCCCTATTGTGATGAgcaattttatcttcctaacAAACTTGAGGAACATATTGATGCAGTTCATACCGGTgcggaaaaaaaatacaaatgtaATATTTGTGGGAAAATTCTAAATACCATGCCAAATCTGAAACTTCACAAACGACTTCATACCGATCGATGTTCGCCATGCCCCAAATGTGATCAGAAATTTGTTCGACCGTCGCTTCTAAAGCAACACCTAAAAACTCACGTTACAGACGACGGTCCATTTATATGTCTGATTTGCGAAAAGTTCTTTAAACATGAACATCTTCTTACCCTTCATAATCGAATTCACACTGGAGAATGTTTTAGTTGCGATCAATGTGATATGAAGTTTCCTCGTCGATTCAAACTTGTCAAGCACATTGCTATCGCACACGACGAATCATATAACAAATTTACTTGCGATCAATGCCCGAAAGTGTTTGCTCGTCCTGAAACTCTTAGAGCGCATAAGAAAATTCATacggaaaattgtttaaaatgttCTTATTGTGACAAAAAATTCGTACGGCCGTACGTATTACGAGAGCATGTCGAACGTTTTCACGTTAATCAAAGTCAAGGATTCAAATGTGATTTCTGTCCGAAGATATTCACACGCAAATATACTCTTCGCATGCATTCGCGTGTTCACACAGGCGATTGTTTCAAATGTAACGATTGCGATAAACAATACGTACGAATTGCCGATTTGAATGATCATTATGCTCGAATTCATGTTAATGAGAATAAAGGCTTCAAATGTGAAACATGTGGAAAGACGTTCGCACGGAGTGACAGTTTGAAAATGCATTCGAAACTTCACACAAACCAATGTTTGGAGTGTCCACATTGTGAAAAGAAATTTGCACGCTGTTCCGAATTTAATGTACACATTGAGCGAGTGCACGGTAATCTTGCACCTGAaccattataa
- Protein Sequence
- MSIKAKAQPEPSVRLTWNDIYKCSDCNVENSDYIQYVRHRMLHSKLSTNKSKAPYSNNLALCPLVHEKGNGKKNASNRKHILFRDSLSENLSKEEAKWNELRLGHLKHQCEICMVLFSSFAAYKLHLKNHTGSCLSCPHCPKKFTRPYRMEEHIQRVHMKFSLGYSCDICNKVYSWKQSLLAHKKLHTDECPSCPHCNIKFITITKVNAHIKLVHERKGPIFRCDICKKEFFKERNFITHKRIHTDEGLSCPHCDRKYLRRSELNDHIEIIHINKGKGFLCDHCPKVFSGRQSLKLHLKIHSGKCEICTHCGSVECEQKKQCLICPHCSKKYIRLSKLKEHIEKMHCSQSTVPCEICSKPFGTSSELQHHRNVHEEECSLCPYCDEQFYLPNKLEEHIDAVHTGAEKKYKCNICGKILNTMPNLKLHKRLHTDRCSPCPKCDQKFVRPSLLKQHLKTHVTDDGPFICLICEKFFKHEHLLTLHNRIHTGECFSCDQCDMKFPRRFKLVKHIAIAHDESYNKFTCDQCPKVFARPETLRAHKKIHTENCLKCSYCDKKFVRPYVLREHVERFHVNQSQGFKCDFCPKIFTRKYTLRMHSRVHTGDCFKCNDCDKQYVRIADLNDHYARIHVNENKGFKCETCGKTFARSDSLKMHSKLHTNQCLECPHCEKKFARCSEFNVHIERVHGNLAPEPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202841;
- 90% Identity
- iTF_00202841;
- 80% Identity
- -