Bmor021493.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Beris morrisii
Gene Symbol
-
Assembly
GCA_951812415.1
Location
OX638312.1:92333988-92335637[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0019 0.23 12.9 2.5 1 23 80 102 80 102 0.98
2 16 2.3e-07 2.7e-05 25.3 4.1 1 23 108 131 108 131 0.95
3 16 2.6e-06 0.00031 21.9 2.8 1 23 138 160 138 160 0.98
4 16 3.3e-07 4e-05 24.8 0.8 1 23 166 189 166 189 0.98
5 16 2.6e-05 0.0032 18.8 1.2 1 23 197 219 197 219 0.98
6 16 2.1e-07 2.5e-05 25.4 3.9 1 23 225 248 225 248 0.95
7 16 1.1e-05 0.0013 20.0 3.6 1 23 256 278 256 278 0.99
8 16 7e-07 8.5e-05 23.7 1.9 1 23 284 307 284 307 0.98
9 16 0.015 1.8 10.1 3.3 1 23 315 337 315 337 0.98
10 16 2.1e-07 2.5e-05 25.4 3.9 1 23 343 366 343 366 0.95
11 16 2.2e-06 0.00027 22.2 3.4 1 23 374 396 374 396 0.99
12 16 3.1e-07 3.7e-05 24.8 0.8 1 23 402 425 402 425 0.98
13 16 2e-05 0.0024 19.2 0.8 1 23 433 455 433 455 0.98
14 16 5e-07 6.1e-05 24.2 4.7 1 23 461 484 461 484 0.95
15 16 0.00069 0.084 14.3 4.5 1 23 492 514 492 514 0.99
16 16 2.4e-05 0.0029 18.9 0.3 1 23 520 543 520 543 0.98

Sequence Information

Coding Sequence
ATGAAACTAATTAAAACAGGAAAGACAGAGGATTGTGCTACATTAAGTGATGACCCATTAGAAAAGACCAGTTTACGAAATATGATGGAATCTGGCATTCAACATGAGACATCTTTCGTGCAAGAAATAAAGCAGGaacccgaaattgaaattatggATGTGGACGATATCAACGAAACATCCTCGGAAGAAAAGTGTTCTAAAAGTGAACTAAATGGCGATGAAGACACAAAGCGTTTTGAATGTGCAGTATGCTCGAAATTTTACAATTGTAAATCGGAACTGAAACAGCATATGATAATGCATTCTGAAGACAGACCATTTCTAtgcaaaatttgttcaaaaacaTTTCGAAGAAAGCCCCATTTAAAGGCACATATGCGAACGACACATAACGCCGGAGCGACAAAGTTTGAATGTTCGACATGCTCGAAATTATTCAACAGCAAATATCAGTTGAAGCGGCATATGATAACGCATACCGATGAAAGACCATTTCAGTGTGAGAAATGTCCAGAAACATTTCGGAGTAGTGTCGATTTGAAGAGACATACGCGAATATTACATGACGATGATAAAAGTATGCTGTTTGAATGTACAGTATGCTCGAAATTTTACAATAGTAAATCGGAATGGAAAGAGCATATGATAAAGCATTCTGAAGACAGACCATTTCTAtgcaaaatttgttcaaaaacaTTTCGAAGAAAGCCCCATTTGAGGGCACATATGCGAACGTCACATGACGACGGAACAGCGACAAAGTTTAAATGTTCGACATGCTCGAAATTATACAACAGCAAATATCAGTTGAAGCGGCATATGATAACGCATACCGATGAAAAACCATTTCAGTGTGAAAAATGTCCACAAACATTTCGGAGTAGTTTCGATTTGAAGAGACATACGCGAATATTACATGATGATGATAAAAGTATGCTGTTTGAATGTACAGTATGCTCGAAATTTTACAATTGTAAATCGGAATGGAAAGAGCATATGATAAAGCATTCTGAAGACAGACCATTTCTAtgcaaaatttgttcaaaaacaTTTCGAAGAAAGCCCCATTTGAGGGCACATATGCGAACGTCACATGACGACGGAACATCGATAAAGTTTCAATGTTCGACATGCTCGAAATTATTCAACAGCAAATATCAGTTGAAGCGGCATATGATAACGCATACCGATGAAAGACCATTTCAGTGTGAAAAATGTCCAGAAACATTTCGGAGTAGTGTCGATTTGAAGAGACATACGCGAGTACTACATGACGATGATAAAAGTATGCTATTTGAATGTACAGTATGCTCGAAATTTTACAATAGTAAATCGGAATGGAAAGAGCATATGATAATGCATTCTGAAGACAGAccatttttatgcaaaatttgttcaaaaacaTTTCGAAGAAAGACCCATTTGAGGGCACATATGCAAACGTCACATGACGACGGAACAGCGACAAAGTTTAAGTGTTTGACATGCTCGAAATTGTACAAAAGCAATTATCGGTTGAAGCGGCATATGACAACGCATACCGCAGATAGAACATTTCAGTGTGATATATGTAAACAAGTATTTCGCTATGAAAACGTTTTGGAGGCACATATGAAGTCGATACATGAAACAGCGAATGTAACATAA
Protein Sequence
MKLIKTGKTEDCATLSDDPLEKTSLRNMMESGIQHETSFVQEIKQEPEIEIMDVDDINETSSEEKCSKSELNGDEDTKRFECAVCSKFYNCKSELKQHMIMHSEDRPFLCKICSKTFRRKPHLKAHMRTTHNAGATKFECSTCSKLFNSKYQLKRHMITHTDERPFQCEKCPETFRSSVDLKRHTRILHDDDKSMLFECTVCSKFYNSKSEWKEHMIKHSEDRPFLCKICSKTFRRKPHLRAHMRTSHDDGTATKFKCSTCSKLYNSKYQLKRHMITHTDEKPFQCEKCPQTFRSSFDLKRHTRILHDDDKSMLFECTVCSKFYNCKSEWKEHMIKHSEDRPFLCKICSKTFRRKPHLRAHMRTSHDDGTSIKFQCSTCSKLFNSKYQLKRHMITHTDERPFQCEKCPETFRSSVDLKRHTRVLHDDDKSMLFECTVCSKFYNSKSEWKEHMIMHSEDRPFLCKICSKTFRRKTHLRAHMQTSHDDGTATKFKCLTCSKLYKSNYRLKRHMTTHTADRTFQCDICKQVFRYENVLEAHMKSIHETANVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-