Bmor008302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Beris morrisii
Gene Symbol
salm
Assembly
GCA_951812415.1
Location
OX638311.1:11245529-11259176[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00088 0.11 14.0 0.7 2 23 170 191 169 191 0.97
2 20 1.3e-06 0.00016 22.9 1.2 1 23 197 220 197 220 0.98
3 20 8.4e-06 0.001 20.3 2.9 1 23 258 281 258 281 0.97
4 20 8.9e-07 0.00011 23.4 1.1 1 23 288 310 288 310 0.99
5 20 0.00068 0.083 14.3 2.3 1 23 316 339 316 339 0.98
6 20 0.00044 0.054 14.9 0.5 2 23 498 519 497 519 0.96
7 20 1.1e-05 0.0014 19.9 1.1 1 23 572 595 572 595 0.98
8 20 0.00041 0.049 15.0 0.5 1 23 602 624 602 624 0.96
9 20 5.9e-06 0.00071 20.8 0.6 1 23 630 653 630 653 0.98
10 20 0.016 1.9 10.0 0.1 2 23 710 731 709 731 0.97
11 20 0.00031 0.038 15.4 3.6 1 23 737 760 737 760 0.98
12 20 0.00028 0.034 15.5 6.0 1 23 765 787 765 787 0.98
13 20 9.4e-07 0.00011 23.3 1.3 2 23 933 954 932 954 0.97
14 20 1.9e-05 0.0023 19.2 2.0 1 23 960 982 960 983 0.96
15 20 1.2e-05 0.0015 19.8 0.9 2 23 994 1015 993 1015 0.96
16 20 0.0006 0.072 14.5 5.4 1 23 1021 1044 1021 1044 0.98
17 20 0.00024 0.029 15.7 2.6 1 23 1052 1074 1052 1074 0.99
18 20 2.4e-06 0.00029 22.0 1.2 2 23 1081 1103 1080 1103 0.97
19 20 0.0006 0.073 14.5 2.5 1 23 1113 1135 1113 1135 0.98
20 20 8.1e-07 9.8e-05 23.5 1.5 1 23 1141 1164 1141 1164 0.98

Sequence Information

Coding Sequence
ATGGATTTGAAGAAGGTTTGCAGAACTTGTCTGCAACACAACGTACCTCTGATGCCTATTTTTAAGATTTCTGAAGTGCCCAATTCAGAAATCACTAAACATACAATTCTAGATTTACTAGAACTCTTCACTGGAATCTCGGTGTCTCCTAACGATGGCCTTTCTGATAACATTTGCAGCGATTGTGTAGACATATTACATCAATCGTATAATTTCAAGTTAAAATGGCTTAAATCAGAAAATATTTCCAAGCAATTAACTGACGACAGAAATCATGTGATGGATTCAACCAACTCCACAATTAAATATGAACACTGTACTGCAATGCAATTAACTGACGACtatgaaatattaaatgaaGAAGAGGATATCTTAGAGCATGGTATTACGGAGCAACATATATCATACGTGCAGGAAGTAAAGCAAGAACAAGAAATCCAGATTAGTACGGAAGCAGCGGATTTTAACGAAACTAATTCCCACAGAAAACGTGTAATAAACGATTTACAATGTTCGGTATGTATGAAGattttcaaaaacaaacaaaacataaGAAATCATATGATCATTCATACGAACGGCTTACCTTATAAGTGTGAAATTTGTTCGAAAACGTTTCGCtataaaaaagaattaacaGAGCATGTACGAATTGATCATCCGGATCATATAacgattttaaataatttgaattcgAAAAGTTCTTCGAAAATCTTCTCTGAAAAGAGTGATCCAATTAAACAGACGAAAAGGGATGATGCAGATCGCCCGTTTCAGTGTGAAATTTGTTTGCGTACATTTGTCCGAAGGGACAACTTAACGAGACACCATGAAACGTATCATTCGAATAAGGTGAACAGTTTTAAATGTCCGATATGTTCGAAAGTATTCAGTAAAAACAGTGAATTTGTTGTACACTACAGAAGCCATTCCGCCGGAAAACCatttaaatgtgaaatttgtgaAGAAAGTTTTCAGTACACATGCTATTTATTGAAACATATGGAAACGATACATTCCGGCGAAACAACAAATAATACGAATAAAGATGTGAGTCTTGTTCAAGATATAAAACCAGAACAAGAAATCAAGATAGATATGAAAAAAGGTGAACTCAATGAAACTGATCCTAAGGTGTCTTCCAACGATGGCCTTCCTGATCACATTTGCGGCAATTGTGTGGGCATATTACATCAATCGTATAATTTCAAGTTAAAATGCCTTAAATCAGAAAATATTTCCAAACAATTAAATGACGACAGAAATCATATGATGGATTCAACCAACCCCACAATAAAGTATGAACACTGTACTGGAACTGACGACTATGAAACATTAAATGAAGAACAGGATATTTTAGAGCGTAGTATCACAAAGAAAGGTGTGTCATACGTGCAGGAAGTAAAGGAAGAACAAGAAATCGAGATTAGTACAGAGGCTGCCGATTTTATCGAACCTGAATCTCACGAAAATCGTGTAATAAACGATTTACAATGTTCGATATGTATGAAGGCGttcaaaagcaaacaaaatataAGAAATCATATGGCAATTCATACAAACGATTTTCCGTATAAGTGTGAAACTAGTTCAAAAACGTTAAGCtataaaaaagaattaacggagCATAGACGAATCGGTAATCGGgttgatattaaaaataatatgaattGTAAAGTTTTCTCGGAAAAGATTGATGATGCAGATCGTCCATTTCGGTGTGAAAAATGTTTGCGAGATTTTGTCCGCAAAGGAAATTTAAATCGACACATTGAAACGTATCATTCGAATGAAGTGAACAGTTTTAAATGTCCGATATGTTCGAAAGAATTCACTGGAAACAATGAAATTACGAAACACTACGGAAGCCATTCCGACGAAAAACCatttaaatgtgaaatttgttcGGAAACTTTCCAGAACACGAACCTTTTGACGGCACATATGCGAACTGTACATTCCGATGGAAAAACGAACAACATTATTGAAGAGGTGTCTCTTGTAAAAGATGTAAATCAAGAAAAACAAAtcgaaataaatatgaaaagcgATGATCATAATGAAACTCATACTAGCAATGAATGCGATTCAACGGATCGTATTCCACTCTATAGTCCTACAGATTTAACTTGTGAAACTTGTGCGGTAGTTGCTTCTACCATGTCTGAACTAATTGAACATATGAAAACGCATGCAGCAGACTTTCCATTTAAATGTAGATTTTGTACTAAAATATTCATTTACAAATCGAAATGGAGAAGTCATATTCGAACACAACATTCCGGTGGAAAGTTTAGTTGTACGAAATGTTCTGAAACATTCCATTCGAAAACTCAATTGTATCAGCATATGaaaacacataatgaaaaacaatcAATTCAGTGTGAAGTCAAGCAAGTATCTCCTCACGACGGTCTTCCCGATAAGATTTGTAACGATTGTCACGACCAAATAAATCTAACATATAAATTCAAGCTAAAATGCGAAAAATCGcaagaaattttaatgaaatttaggGATAGTGGGAAAACTGTGACTGAATGGAAAAATAGCTTAAATGAATATCAACAATACACTGAAACGTATATGAAACTAATTAAAACGGAAAAGACTGAATATAGTGAAATACTACAGGATCATGAAGATGGTTCGCCCGATAGTTTAAAGCATGAAATTGCGAAACCGGGGATATCTCCCACACAAGATGTAAAACAAGAGCCTGAAATCGAGATTAGTATGGAAAAAACGGTTTGCAACGAACCTGATTCGGACGAAGAACGTTCAGAAGAAGATTTACGATGTTCGGTAtgtacaaaagtctttaaggaaaagaaaaatttgaaagttcATATGCGAATTCATACTGGCgatctaccatacaaatgtgaaatttgcgTCCAAGCGTTTCGCTATAAAGATTATTTAAATGAGCATATGCTACGCCATCATCCTGCTGATTATCCAATTAAAACCGATTGGAATTGTGAAAGTTGTTCGAAAATTTTCTCAACAAAAAGTAAACTGACTATCCATATGAAAATTCATGAACCGAATCGTCCGTTTCAATGTGAGATTTGTTCGTATACATTTGCCCGTAAATGCACATTAAGTCAACACAAACGAAAATATCATTCGGATGTGAGTGAGATTAGCTTCAAATGTGATAAATGTTcgaaaattttctcgaaaaaaagTGTTTTCGTTATACATTATCGAAGTCATTCGGGCGAAAGACCATTAAAATGTGAAATATGttcgaaaaaatatcgatatcaaGGGAATTTAAGAGATCACATGCGAAGAGAACATTCCGAAGGAACAACAAATACAAAACAGTTCAAATGTCCGATATGTTCGAGCTTATTTCTACGTAAAAGTAATTTGAGTCATCATATGCGGATTCATACAGGTGAAAAACCGTTTCAgtgtgaaatttgtaaaaaaaaatttctggataAGAGCAATTTAAAAGCTCATATGCGTAGAGTACACGGAGTTAAATCAGAAGCTAGTTAA
Protein Sequence
MDLKKVCRTCLQHNVPLMPIFKISEVPNSEITKHTILDLLELFTGISVSPNDGLSDNICSDCVDILHQSYNFKLKWLKSENISKQLTDDRNHVMDSTNSTIKYEHCTAMQLTDDYEILNEEEDILEHGITEQHISYVQEVKQEQEIQISTEAADFNETNSHRKRVINDLQCSVCMKIFKNKQNIRNHMIIHTNGLPYKCEICSKTFRYKKELTEHVRIDHPDHITILNNLNSKSSSKIFSEKSDPIKQTKRDDADRPFQCEICLRTFVRRDNLTRHHETYHSNKVNSFKCPICSKVFSKNSEFVVHYRSHSAGKPFKCEICEESFQYTCYLLKHMETIHSGETTNNTNKDVSLVQDIKPEQEIKIDMKKGELNETDPKVSSNDGLPDHICGNCVGILHQSYNFKLKCLKSENISKQLNDDRNHMMDSTNPTIKYEHCTGTDDYETLNEEQDILERSITKKGVSYVQEVKEEQEIEISTEAADFIEPESHENRVINDLQCSICMKAFKSKQNIRNHMAIHTNDFPYKCETSSKTLSYKKELTEHRRIGNRVDIKNNMNCKVFSEKIDDADRPFRCEKCLRDFVRKGNLNRHIETYHSNEVNSFKCPICSKEFTGNNEITKHYGSHSDEKPFKCEICSETFQNTNLLTAHMRTVHSDGKTNNIIEEVSLVKDVNQEKQIEINMKSDDHNETHTSNECDSTDRIPLYSPTDLTCETCAVVASTMSELIEHMKTHAADFPFKCRFCTKIFIYKSKWRSHIRTQHSGGKFSCTKCSETFHSKTQLYQHMKTHNEKQSIQCEVKQVSPHDGLPDKICNDCHDQINLTYKFKLKCEKSQEILMKFRDSGKTVTEWKNSLNEYQQYTETYMKLIKTEKTEYSEILQDHEDGSPDSLKHEIAKPGISPTQDVKQEPEIEISMEKTVCNEPDSDEERSEEDLRCSVCTKVFKEKKNLKVHMRIHTGDLPYKCEICVQAFRYKDYLNEHMLRHHPADYPIKTDWNCESCSKIFSTKSKLTIHMKIHEPNRPFQCEICSYTFARKCTLSQHKRKYHSDVSEISFKCDKCSKIFSKKSVFVIHYRSHSGERPLKCEICSKKYRYQGNLRDHMRREHSEGTTNTKQFKCPICSSLFLRKSNLSHHMRIHTGEKPFQCEICKKKFLDKSNLKAHMRRVHGVKSEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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