Bmor013990.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:105914857-105915465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-08 8.3e-06 26.3 0.0 1 38 15 53 15 56 0.93
Sequence Information
- Coding Sequence
- ATGCCGCGTAACTACAAAAGGACAACAGCCAGGCAAGACTGGGACCcagaaaaaatgagaaaaggAATCCTTCATGTATTTGAAGGAACTATGGGTTACTTAAAAGCTGCAGAAACCTATAGAGTACCAAAGTCTACATTGCAAGATCGCGTcaacaaatttagaaaaaatggaGACTTGGCGATATCTATATCTAAAGGTTTAGGCCGTTTTAAGCCGATATTTTTTGCTGTTCAGGAACAAAGCTTAGTTGACCTTGTTTTTACTATGGAAAGGCGCTTATTTGGTTTAACGTATAAAGACCTTCGTCGTTTAGCATTTCAATTTGCTGAATCTAATAAagttattcataattttaataaggCAAATAAATTATCGGGAGAAGATTGGTTAGCTGGTTTTATAAAGCGACATCCGAATTTATCTCTGCGTGCAGCCGAGCAAAAGTCTATGGCCAAAGCAAAGGGATTCAACAAGATCCGCGTGGATAAACTCTTTGATTTGCTTGAAGAGCTTATAGACCAATATAGATTTCCATCAACAAAGATTTTCAACGTGGATGACACGAGTCTAACCACAGTAATTAGATTAAGTGGAGTGATTATTTAG
- Protein Sequence
- MPRNYKRTTARQDWDPEKMRKGILHVFEGTMGYLKAAETYRVPKSTLQDRVNKFRKNGDLAISISKGLGRFKPIFFAVQEQSLVDLVFTMERRLFGLTYKDLRRLAFQFAESNKVIHNFNKANKLSGEDWLAGFIKRHPNLSLRAAEQKSMAKAKGFNKIRVDKLFDLLEELIDQYRFPSTKIFNVDDTSLTTVIRLSGVII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203468; iTF_00203440; iTF_00203435;
- 90% Identity
- -
- 80% Identity
- -