Bmor031872.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- R1A1-element\ORF2
- Assembly
- GCA_951812415.1
- Location
- OX638314.1:10066932-10071817[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-09 3.5e-06 27.5 0.0 3 38 14 49 12 54 0.91 2 2 6.2 4.4e+03 -1.6 0.0 5 19 363 377 361 378 0.84
Sequence Information
- Coding Sequence
- ATGCCCAAAAAAGGTCAAAAGGCTCGGAAATGGGATGCCGAAATGATGAGACGAGCAGTACAGGAAgtaaaaaatggaaatatggGTATTTTCTTAGCCGCAAAGACGTTCGGAGTTCCACATACCACATTACAACGAATCGCGAGAAGTGACAAGTCAACGGAGGAACTTTTAGCTACTCCCATAGGACGTAAGCCGGTATTCAATAAAACTATCGAAAAGGAACTAGTTGAATACTTAGTACAAATGGAGGCACGTTTCTGGGGTTTAACTAGAACCGATATTCGTTCCTTGGCATTTcaacttgcaaaaaaaaataacattcccaATCCATTTTCGTTATTGAAAGAGTGTGCGGGTAAGGATTGGCTCTATTCCTTTTGTAGAAGGCATAAAGATAAACTTAGCTTGCGTGTACCAACTGGGACATCGTTTGATAGAGCCAAGGGCTTTACTCGAGAAAAAgttaacatattttttgatttgttgGAAAAAGAGTATGATAAGCATCGTTTTCCGCCAACGAGAATTTGGAATGTAGATGAAACTGGACTGTCTATAGTTCAAAGCAGGCAGCCCAAGATTTTGGCTCGAAAGGGGAAACGGCAGATAGGTGGAATGACATCCGCAGAAAGAGGCTCTCTTATAACTGTAATTAACTGTATGAGTGCAGGCGGTAATTTCGTTCCTCCGTATTTCATCTTTCCCAGAAAAAAACAGAATCCACTTTTAATGAAACATGCTCCACCTGGCTCCGACTCGTCATGTCACATATCCGGATGGGTACAGATTCCCATTTTCACAAAGTGGTTCGAACATTTTCTACAGTTCACAAAACCATCGAAAGAGGAACCTATTTTGCTGATTCTAGATGGGCACTACAGCCATACCAGAAATATAGAGGTGATAAATCTTGCACGTGAAAATGGTGTGATTATTATTTCTCTGCCGCCACATTCCACGCATAAAATGCAGCCACTAGATAAGACTTTCATGGGGCCGTTAAAGGTGTATTACAAtgctcaaattaaaagatttattaGAGAGACGGGCCGGAAAGTCACGCAATATGATGTAACCGAACTTTTTACAAGAGCCTATCAACAAGTTCAATCTGGACAAATTGCAATCAACGGTTTCAGGTGCACTGGCATTTATCCTTTCAACAAATACATTTTTACGGAAGCTGACTTTATTTCTGCAGAAAACAACGAAAACGGATATAATAACACAGAAATTGAGTCAATTCAGGAAAATTCTGCAACTCTTTTAGACTCGCCTCGCATCTCTGCATTTTTAGTTGGTAACGAGCCTATCGCCAGTACAAGTAGAGAGCATTGGACTCCTTGGGATGTATCTCCTCCTCCAAACATTCATCGGCCTCCCACTAGCCGTAGAGGAAAAAAATCGATGGCAACTGTATTAACAACATCGCAATATAAGATCAATCTACAGGAAAATGAAAAAGTAAAGGGTATACCATATTACCCGAAGTTACTCTATACGTTTGATGGGCCCAGGGGAGTCAGTGACATTGATGTCACATGTGTGAATGAAGCGGCAATGGCCCGTGAGTTTGAATGGAAGGTAATGAATGGATGGAGCGTGAGTGACCATAACCCCATAGAGATCACGATGATTCTCGATGGGGTGGTGGAAGTGCATGAAACGCCAGCTGTCAAAGGTTGGTGTACGAAAGGGTGTAACTGGGTGGAGTATGGAGAGAAGATCAGGGAGGCAGCTGAATTGCTGCCAATGACCGCCTTTGCGGCATTGCCGCTCAGTGATCAGATCTCTGCACTCCAAAGTATGATTGATAGTGTGAATGACTCCACGTTTGCTAGGATTCGTTCTACGAATCCTAGGCGTTTGAAATGGTGGACGAGAGAACTCGGTGTGAAAAGGAAGAGTGTACGGCGCCTTAGGAAGAAATTCCAAAGGGCAAGAGTAAATGAGAGTGAAAATGTTGCTCAACTCAGGCTCGCATATATGCGGGGGATGTATGAGTATCGAGCTCTGCTCATTAAGTGCAAGGAGAATGAATGGAGAAGCTTCGTCGGTGACCATGCCAATGACCCCTGGGGTCAGGTATACAGGATCTGTAGGGAGAAGAATAAAAGGACTGAAGTGTCATCCATTAAGGTTGGTGACAACATAATGGATACATGGTGTGAATCTGTGGGTGCGTTATTGGAGGGTTTCTTTCCAGACGCTGTCTATCGGCCACGTTGTGTTGGTCTTGAAGACGAAGAAGTGCTTGGCTCTGTGCCTGCACTGGAGCGCTGGGAGATCGATATGGCTCTGTCTGGGGTCAGATCTGGTAAGGCGCTTGGGTGTGATGGTGTGACTGGCTTGAAGTTGAAAAACATCTGGCGAGTTATTCCCGAATACCTCCAATGTATGTATGAAAAGTGCTTCAGCGAGAATGAGTTTCCCTCAGCCTGGAAAGTAGCTCGTGTCGTGATATTTTTGAAGTCTCCAGACAGGGTCAGAAATGATCCTGGATCTTACAGGGGCATATCCCTCCTTCCGGCTATGTCAAAGGTTCTGGAAAGAATTCTTGTTCGTAGACTTGAAGAGGTGACCGCCGACAGTCTATCGGATAGACAGTACGGCTTCCGCAGGAGTAGGTCTACCGAGGATGCTTGGATGTATGTGAAGGATTGCGTCAAGAATAGTTGTGCGAATTACGTCCTTGGGGTCTTCATTGACTTCAAGGGCGCTTTCGATTACCTGGATTGGGCAGTTGTGGTTGAAAAATTGCGTGAATCTGGCTGCCAAGAAATCGGCCTATGGTCGAGTTATTTCTCTGGCAGAAGAGCCTTCGTCCAGGGAGTGAATGAGTGTGTTTGGAGGAATGAGTCGAGGGGATGTCCCCAGGGCTCGATTGCAGGTCCATTTATTTGGAACCTTGCAATGAACGAGCTACTGGAGCGACTATCCCTTGAATGTAAGGTGTGTGCGTTCGCCGATGATCTTCTCATCCTTGTGGAGGGGAGATCTCGGCTACTTCTTGAGCAAAGAGGTGCCGCCATGTTGGAGTTAGTCCAATcgtggagtatgaaagtgggTGTGGATGTATCGGTGGATAAGTCGGTGACAATGTTGCTGAAAGGCATCTTGTCTCCCAACCGACATCCATCGGTAAGTGTGAATGGAACGACTCTCCGGTATGCGACTAGTTTCAAGTACCTGGGGGTCAGAGTGGGTGAGAGAATGAACTTTTATCGGCACCTGGTTGATCTCAAGGAAAGATTACTTGTATTGGTGGGTCAGTTGCGCAAAGTAATGCGGCGTGAATGGGGTCTGGGCCGAAAGGCTGTCAGAACCATCTATGGCGGCCTGTTTGTTGCATGTGCAACGTACGGGTCGTCTGTTTTTGCTGAATGTATGTTGACAAAACGTGGAGTTGAACTAATGAATGCTTGTCAGCGTGTTGTGATGTATGCGTGTATACCTGTATGCCGTACGGTTTCGACCGTCGCCATGCAGGTGCTCATGGGAGCTGCCCCGCTGGATCTGGAGGTGGTTCGTAGAAGCATCTCCTTCAAAGTTCGGAGAGGCATACCGTTGCTTGCGAGTGACTGGATAGCGAATGAGGATGTGTCTGATAGGAGTCGTCGTTCAGTGAACGACCTCCTAGATGAATGTTTGATATCTAGGTGGCAAACTAGATGGGATGAGAGTGCCAAAGGTCGGATAACGTATGAGTACATCAAGGATATCTGTTTTGCCAGAGGGGCCCTGGGCTTAGACTTTTGTCTGAGCCTGGGCTACCTCCTTGCCGGTCATGGTAGTATGAATGCGTATTTGTTTGGAATAGGACAGTCGGCGGTGGAGAGTTGCGCTTTGTGTAACGCCCCCGTTGAGGACTGGAAGCATGTGTTGTTTGAATGTGTGGTGTACTCAGACTTGCGTGATTTGAATGAAATGGGTGTACAATGTGTGAATGGAATGTATGTTGTGAGCAAATGTTTAGGAACCCGTGAAAGTTTTGAAAGGTTGAATGAGTTTGCGCGTCTGTCCTTCGCAAGAAGGAAGACCCTCCTCGCTGTTTGA
- Protein Sequence
- MPKKGQKARKWDAEMMRRAVQEVKNGNMGIFLAAKTFGVPHTTLQRIARSDKSTEELLATPIGRKPVFNKTIEKELVEYLVQMEARFWGLTRTDIRSLAFQLAKKNNIPNPFSLLKECAGKDWLYSFCRRHKDKLSLRVPTGTSFDRAKGFTREKVNIFFDLLEKEYDKHRFPPTRIWNVDETGLSIVQSRQPKILARKGKRQIGGMTSAERGSLITVINCMSAGGNFVPPYFIFPRKKQNPLLMKHAPPGSDSSCHISGWVQIPIFTKWFEHFLQFTKPSKEEPILLILDGHYSHTRNIEVINLARENGVIIISLPPHSTHKMQPLDKTFMGPLKVYYNAQIKRFIRETGRKVTQYDVTELFTRAYQQVQSGQIAINGFRCTGIYPFNKYIFTEADFISAENNENGYNNTEIESIQENSATLLDSPRISAFLVGNEPIASTSREHWTPWDVSPPPNIHRPPTSRRGKKSMATVLTTSQYKINLQENEKVKGIPYYPKLLYTFDGPRGVSDIDVTCVNEAAMAREFEWKVMNGWSVSDHNPIEITMILDGVVEVHETPAVKGWCTKGCNWVEYGEKIREAAELLPMTAFAALPLSDQISALQSMIDSVNDSTFARIRSTNPRRLKWWTRELGVKRKSVRRLRKKFQRARVNESENVAQLRLAYMRGMYEYRALLIKCKENEWRSFVGDHANDPWGQVYRICREKNKRTEVSSIKVGDNIMDTWCESVGALLEGFFPDAVYRPRCVGLEDEEVLGSVPALERWEIDMALSGVRSGKALGCDGVTGLKLKNIWRVIPEYLQCMYEKCFSENEFPSAWKVARVVIFLKSPDRVRNDPGSYRGISLLPAMSKVLERILVRRLEEVTADSLSDRQYGFRRSRSTEDAWMYVKDCVKNSCANYVLGVFIDFKGAFDYLDWAVVVEKLRESGCQEIGLWSSYFSGRRAFVQGVNECVWRNESRGCPQGSIAGPFIWNLAMNELLERLSLECKVCAFADDLLILVEGRSRLLLEQRGAAMLELVQSWSMKVGVDVSVDKSVTMLLKGILSPNRHPSVSVNGTTLRYATSFKYLGVRVGERMNFYRHLVDLKERLLVLVGQLRKVMRREWGLGRKAVRTIYGGLFVACATYGSSVFAECMLTKRGVELMNACQRVVMYACIPVCRTVSTVAMQVLMGAAPLDLEVVRRSISFKVRRGIPLLASDWIANEDVSDRSRRSVNDLLDECLISRWQTRWDESAKGRITYEYIKDICFARGALGLDFCLSLGYLLAGHGSMNAYLFGIGQSAVESCALCNAPVEDWKHVLFECVVYSDLRDLNEMGVQCVNGMYVVSKCLGTRESFERLNEFARLSFARRKTLLAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203458;
- 90% Identity
- iTF_00203458;
- 80% Identity
- iTF_00203458;