Basic Information

Insect: Beris chalybata
Gene Symbol: -
Assembly: GCA_949128065.1
Location: OX421896.1:41329258-41340096[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.34 45 6.0 1.5 1 20 285 304 285 306 0.94

2 11 0.32 42 6.1 1.8 1 23 327 349 327 350 0.92

3 11 0.00093 0.12 14.1 1.0 2 23 367 388 366 388 0.97

4 11 0.028 3.7 9.4 2.9 1 23 418 439 418 439 0.97

5 11 3.2e-05 0.0043 18.7 1.8 1 23 445 467 445 467 0.96

6 11 8.3e-05 0.011 17.4 0.8 1 23 488 510 488 510 0.98

7 11 1.3e-05 0.0017 19.9 6.0 1 23 516 538 516 538 0.99

8 11 0.00029 0.039 15.7 3.4 1 23 544 566 544 566 0.99

9 11 2.5e-06 0.00033 22.2 1.1 1 23 572 594 572 594 0.98

10 11 1.1e-05 0.0014 20.1 0.1 1 23 598 620 598 620 0.98

11 11 0.0031 0.42 12.4 0.3 1 23 629 652 629 652 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.34	45	6.0	1.5	1	20	285	304	285	306	0.94
2	11	0.32	42	6.1	1.8	1	23	327	349	327	350	0.92
3	11	0.00093	0.12	14.1	1.0	2	23	367	388	366	388	0.97
4	11	0.028	3.7	9.4	2.9	1	23	418	439	418	439	0.97
5	11	3.2e-05	0.0043	18.7	1.8	1	23	445	467	445	467	0.96
6	11	8.3e-05	0.011	17.4	0.8	1	23	488	510	488	510	0.98
7	11	1.3e-05	0.0017	19.9	6.0	1	23	516	538	516	538	0.99
8	11	0.00029	0.039	15.7	3.4	1	23	544	566	544	566	0.99
9	11	2.5e-06	0.00033	22.2	1.1	1	23	572	594	572	594	0.98
10	11	1.1e-05	0.0014	20.1	0.1	1	23	598	620	598	620	0.98
11	11	0.0031	0.42	12.4	0.3	1	23	629	652	629	652	0.96

Sequence Information

Coding Sequence: atgagcgtgttatttCCAGAATGGCCGCCAAGATCGTGCGTTTTGACACCTTTGGACTATTTTCTTTGGGGCCATATTAAGTCATTGGTCTACACCAATAAGCCGACGACGTTAGAAAAGCTCAGAGCAAATATTGAACGCGAAATTGCTGCTGTATCGGTCGAATTATGCGAAAAAGTGGTCGAAAATTGGGTTGAGCGATTGAACTTCTaTCTCGACCATCACGATTTGGAAGATAATATTCCTGTGAATAGAATCAACACAACATCCAATTCGTTTGCCGATCAAAATAACTTCATTGAAATTTCGGAGGAAGATGATTCAGATGATAATATCGAGTATGTCGAATACAGTGATGGCGACTACGTTTATATCGAAGAGGACGACGAATGCAATGAAGAAGAAACACCGCAAGAAGAAGAGTTAGTTAATCCTGTTATTGAACCCGTTGACGGTGAGGATAAGGAATCCGAAATACCAACCGATGAAAATTCCGAAGAATGCTATCATTGCAGTTCGTGTAATGTGAATTTTGAATCTGTGACGGAACATATCGATCGGTTTCATAAGAATCAATCGGTGCTTTTAGACGGCATCGATACAGAGGAACAAGCTGAACCGAATGATGATGTTTTGATAAAAACCGAACCGACCAATACTGAAGAAATCGCAGAAACGGAAAGTATGGAAATGACTGAAGTTGAATATGTCGAAGAGGATATCGACGGTGGGTATTTGGTACAGCTGGAGGAACCGGacgaaaaaagttttaatgatGCTCATGGTAGACCGTATAAGCGAAAGaAAGTTAAAGTCGACGAGAGCAGCCTAATGAAGAATTCAAATAGTATCCATAAATGCGATTCATGTCAGGGGGTGTTTATGAccgaagaaaatttattaaatcatGAGTGCTTTGTGCAAGAATCGCCTGAACACGTTGGCTCTGATGATACTATCGCAGagGCGACAAGTTTGTACAACTGTACGGAATGTAATCTACAGTTTGATTCCGATTATCTGTTAGGTTTTCATTTGCGAATGCATCACAAGTCGAAGCTGAAGAGCCGACCTAAAAAGACACCATGTGTCCCGGTTGTTTGCTTTGTATGCAACACAACTTTTCCTTCGAATAAAAGCTTCAGACTACATTCACGAATGCACGATCctataaaattaaaaccgaTCGAAGAGGCAATTGGTTACGAAATGAAGTCGTGTTCGAAGGACGGTAAACTATCGACCGATACATTTTACTGTGTGATTTGCCACAAAAGGTATGATTCCAGTTTTCAAGAGGCTCATATGAAGTCACATAAACTCGGACAGAAGCATAATTGTTCGATTTGTAATAAGAAATTTTCGAGTGAAATTAATCTTACAATGCATCTGAGCGTACATCAAGATCAAACTAAGGTCAAGGCGCCAACAAAGGCTGAATTAAGTGGTATTACGTTGCCGTACGAATGTGGATATTGTGGCAGGCAATTTGCCCGACCACATGAAAAGGTCAAACATGAACGGATTCATACAGGTTCAAAACCTTTCAAATGCGAGATATGTGGAAAATGCTTCAGAGTCACCTACTGCCTTACTTTACATTTACGGACACATACCGCCGCTCGACCCTATGTGTGTCCCCACTGTAACAAAAGATATAAAGCCTATGCAGCCTACAATCATCATCTGATGACACACTCGGACGAACGTCCGTACAAATGTCCGCATTGTCCGAAAGCCTTTAAAACATCGGTACAATTGGCCGGACATAAGAACAGCCATACGAAACCGTTTAGTTGTCCGGAATGTAATCGACCGTTTGCATCGTTATATGCTGTCCGAGCTCATATGGAAACACATAAGCGTGGCAGTCAAAATTTAAAGCATCGCTGTATGATTTGCGGAGCAATATATGCGCGAATTTTTGCATTAAAGGATCACATGAAGGAACAACATCAGACTACTTTTGTCGATGGTAACGAAGTGACCGACTTAAATGTTTCCGAAGTTCCATTTATTCACGAGAATGAAATATCGTCGGAATCGATGCTTCCCGATCACGGCGAAGAGATTATGATCGGTGAAATTGAACACTTTCAAACCGAGGAAGTTGTAACGGACTGGATGAAATAA
Protein Sequence: MSVLFPEWPPRSCVLTPLDYFLWGHIKSLVYTNKPTTLEKLRANIEREIAAVSVELCEKVVENWVERLNFYLDHHDLEDNIPVNRINTTSNSFADQNNFIEISEEDDSDDNIEYVEYSDGDYVYIEEDDECNEEETPQEEELVNPVIEPVDGEDKESEIPTDENSEECYHCSSCNVNFESVTEHIDRFHKNQSVLLDGIDTEEQAEPNDDVLIKTEPTNTEEIAETESMEMTEVEYVEEDIDGGYLVQLEEPDEKSFNDAHGRPYKRKKVKVDESSLMKNSNSIHKCDSCQGVFMTEENLLNHECFVQESPEHVGSDDTIAEATSLYNCTECNLQFDSDYLLGFHLRMHHKSKLKSRPKKTPCVPVVCFVCNTTFPSNKSFRLHSRMHDPIKLKPIEEAIGYEMKSCSKDGKLSTDTFYCVICHKRYDSSFQEAHMKSHKLGQKHNCSICNKKFSSEINLTMHLSVHQDQTKVKAPTKAELSGITLPYECGYCGRQFARPHEKVKHERIHTGSKPFKCEICGKCFRVTYCLTLHLRTHTAARPYVCPHCNKRYKAYAAYNHHLMTHSDERPYKCPHCPKAFKTSVQLAGHKNSHTKPFSCPECNRPFASLYAVRAHMETHKRGSQNLKHRCMICGAIYARIFALKDHMKEQHQTTFVDGNEVTDLNVSEVPFIHENEISSESMLPDHGEEIMIGEIEHFQTEEVVTDWMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00203841;
90% Identity: -
80% Identity: -