Bcha001592.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:26066052-26075652[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.8 1.1e+02 4.8 1.2 1 21 199 219 199 220 0.91 2 13 0.00098 0.13 14.0 0.2 3 23 229 250 227 250 0.92 3 13 0.16 21 7.1 0.7 8 23 255 271 254 271 0.93 4 13 0.00041 0.055 15.2 1.9 2 23 277 298 276 298 0.97 5 13 0.016 2.2 10.1 4.7 1 23 304 326 304 326 0.95 6 13 3.4e-06 0.00045 21.7 1.5 3 23 334 354 332 354 0.96 7 13 2e-06 0.00027 22.5 0.8 1 23 381 403 381 403 0.99 8 13 0.039 5.2 9.0 0.2 2 23 410 432 409 432 0.94 9 13 7.4 9.8e+02 1.8 2.3 1 10 452 461 452 474 0.75 10 13 1.8e-05 0.0024 19.4 2.4 1 23 480 503 480 503 0.97 11 13 5.7e-05 0.0075 17.9 0.6 1 23 509 531 509 531 0.97 12 13 0.0045 0.6 11.9 0.2 1 23 537 559 537 559 0.98 13 13 0.16 22 7.0 0.2 1 12 565 576 565 580 0.87
Sequence Information
- Coding Sequence
- ATGGAGAAACCCGTAACAATTGTAATAGAAAATACCTGCCGTACTTGTATGGTACAGGATTTCAGCAATGAGCATATACCTCTCTTCCATGGTGCGTTATCGTGTCAACTCAGCCACCCCGAAATCTTGGAGGAAGTGTTGTTCTTCAATTTAGGGCTGTGGGAGAATGATGGACTACCGCAGCAATTATGCATTAGCTGCTTCGACACATTTACACAGATATCTGAATTTCGAAAACAATGCAATGCAGTTCAGGATAATCTTTCGGTTTATCGTAGTCTGATGTTGAAGGCTAATGAAAAGTTAGTTGAAGATTGTAAAACTGAATGTTTAACGACTGACTCTGTTTCTCAAGATAATCATTCATCCGTTGGAGAAGATCCGAACGAAGAAGATCCGAACGAAGAAGATCCGAACGAAGACGATATTGGCGAAAGTCTCTTTAGGGAATATATCGAAGAAGATTACACAATGGACTTCGAAGAAAATAAGGATTTCGGTCTGTGTATTGAGGAGAAAAAGATAGCAGTCGGGAATGAAGAAATCAAGGAGTTACACGGCAACGATATCACTgaGGAAGTTATCAAATCTGATCATACATGTAATTTCTGTAGAAAAGATTTTTTCGAAGCAAGCATTTTATTAACACACATCAAAAAATGTCCTAATCGCATCATCGTAATATGCGATTATTGTACACTTGAATTCGAATCGAATGAAAATCTTAAAACACATTTGACGGAAACGCATTCAGACGGCAGTCGTGTATTTGATACTGCGCACAATCTTAAAAGACATGCGCAACGCGTTCATACAATAATCGAAAATCAATGTTCGATTTGCGGAAAGGAGTTTACCAATATTCATCGCTATCAATATCATATGGAGTCACACAATCCGAAAAAGAAATTCCAGTGTCAATATTGCGATAAATCCTTCATGCAAATTCACCATAAGATAAACCACGAGACTGTGCATACCGGAGAACGTCCTCACTTGTGTCCTGTATGCGGAAAAAGCTATAAGTATCCGACACAATTAAAGATGCATATGTCACGACACGAAAAACCTGAAAAATGTCAGACTGATACTGATCGTTCCAAAGAGAAATCTCAACGAAGTCAAGTGTTTGTGAGTCCTTACCAATGTAATATTTGTGGCAAATTCTTAAGTACAAAACAAACACTAGAAGGTCACATGAATACGCATACAGACACCCGACCTATCCAATGTGATTTATGTGATAGGACATGGCGATCGAAAGGCGCATTACAATTGCACAAATACAGAATACATCGTGCAtcgaatataaaagaaaatatttcgaCAACAGACGAAAGACGGGATTATCCTTTTAGCTGTTCGATTTGTTCTAAAGGTTTCCTCGTTGGCCGCATACTCGCCGAACATATGAAAGTTCATAGTGAAGACCGGAAATATGTTTGCAAGGAATGCGGCTCTGCTTTCAAACGAAAAGCACATTTGGATACACACATACGGCATATTCATATAAAATTGATGCAATTTTCATGTGATCtttgtgataaaaaatttgtaagCAAAGGCGAATTAAAAGGACATAAAGTGACGCACTTTGaTGAAAAACCATTTAAATGTTCCGCCTGTCCGTTTGCATTCAAATGGAAAAGCGCGTTACGAGTGCACGAACGGATTCACACCGGTGAAAAACCATTTGCTTGTGAAGTCTGTGACAAACGTTTTGCAAATACTCAATCAGTACTGTTGGTCCGTGTTTTACGATTACGAGCGGAAGTTGATCTCATCAAGGAACGTTTAAATGCCAAAGATTGGGATAACGCTACCTATTTCGGTGCTCTACTCTGTCAAGCGGACGGTATTCAATTTAGTAGGGCCGCTCTATCGGCCAAGTGTTCCGTTCAAATTAAACTCGAACTGAACGAGAAGCGGGAAAAGCAGCTGAATTTAGCGGCAAAGAAGCGAAGAATGTCCAAACAGAAATCAATGGACAGTATTGATTTGCAGAGCAAACTAAATAATCCGACCAGCGGATCCGATTTCAATATTCCGGCTGAACTTCTGCGAAAAGTCGCGTTCGAACACGAAGAATTGGCGAAATGCAAAATGAGCCCGAAATCGGCCAAGTACATTCTTTTGCAGCAAATTCAAAATCTACCGGGATTCGGCGAGGAGGTATTCAGTGGCGTTACAACTAACGAGAGTTCGGTTCGATGTGATCTTTCGGTAGGACCGCAGGCATTAGTTGTTTGTACCGGCGAGGATCGAATGAGTATACCGAAAAAAGCACACCCTGGACTCGGACGAAGAAGACAGCGGCGACGATGA
- Protein Sequence
- MEKPVTIVIENTCRTCMVQDFSNEHIPLFHGALSCQLSHPEILEEVLFFNLGLWENDGLPQQLCISCFDTFTQISEFRKQCNAVQDNLSVYRSLMLKANEKLVEDCKTECLTTDSVSQDNHSSVGEDPNEEDPNEEDPNEDDIGESLFREYIEEDYTMDFEENKDFGLCIEEKKIAVGNEEIKELHGNDITEEVIKSDHTCNFCRKDFFEASILLTHIKKCPNRIIVICDYCTLEFESNENLKTHLTETHSDGSRVFDTAHNLKRHAQRVHTIIENQCSICGKEFTNIHRYQYHMESHNPKKKFQCQYCDKSFMQIHHKINHETVHTGERPHLCPVCGKSYKYPTQLKMHMSRHEKPEKCQTDTDRSKEKSQRSQVFVSPYQCNICGKFLSTKQTLEGHMNTHTDTRPIQCDLCDRTWRSKGALQLHKYRIHRASNIKENISTTDERRDYPFSCSICSKGFLVGRILAEHMKVHSEDRKYVCKECGSAFKRKAHLDTHIRHIHIKLMQFSCDLCDKKFVSKGELKGHKVTHFDEKPFKCSACPFAFKWKSALRVHERIHTGEKPFACEVCDKRFANTQSVLLVRVLRLRAEVDLIKERLNAKDWDNATYFGALLCQADGIQFSRAALSAKCSVQIKLELNEKREKQLNLAAKKRRMSKQKSMDSIDLQSKLNNPTSGSDFNIPAELLRKVAFEHEELAKCKMSPKSAKYILLQQIQNLPGFGEEVFSGVTTNESSVRCDLSVGPQALVVCTGEDRMSIPKKAHPGLGRRRQRRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -