Bcha038481.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421897.1:107538458-107541642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.7e-05 0.0023 19.5 2.5 1 23 162 185 162 185 0.96 2 12 0.00041 0.054 15.2 1.5 2 23 189 211 188 211 0.96 3 12 0.00023 0.03 16.0 0.5 1 23 220 243 220 243 0.98 4 12 6.7e-05 0.0089 17.7 0.1 1 23 250 273 250 273 0.97 5 12 0.00042 0.056 15.1 4.5 1 23 280 302 280 302 0.98 6 12 7.3e-07 9.7e-05 23.8 0.8 1 23 307 330 307 330 0.98 7 12 0.89 1.2e+02 4.7 0.1 5 23 565 583 563 583 0.93 8 12 0.0084 1.1 11.1 1.7 1 23 589 612 589 612 0.95 9 12 0.35 47 6.0 2.7 2 23 616 638 616 638 0.95 10 12 0.00039 0.052 15.2 1.2 1 23 647 670 647 670 0.98 11 12 1.8e-06 0.00024 22.6 1.4 1 23 677 699 677 699 0.98 12 12 8.1e-06 0.0011 20.5 0.7 1 23 704 727 704 727 0.96
Sequence Information
- Coding Sequence
- ATGATCTTCCTAAAATCTCTCTTGGTCAACTTTCAGGTATCGCCTTCTCAACCCGAATATATTTGCAAAATTTGCCTCGATGAAATACAAGAAACATATTCCTTTAAGTTGAGATACGATACGAGTTTGACGGAGCAACCGACGGACAACGTTACGAAAAATACAAACGATCTTCATAGCGAACATGAGCCCCATGCTGATACGAGTATTGGACTTATCAAAACGGAAAAGGACTACgaagaatatgaaatattaaacgAAGAACAGATAAAACAGGAAGACACCACCGACGAGTTTTCAGAGCTCGTCACTGTGAAAGAAGAGAAATTGTTTGTACAAGAAGTTAAAGCAGAACCCGAAATTGATATAACGGACAGCTTAAACGAAACGAATCTCAACGGGAACAATTTACAATGTACGGGAATCGTTCAAAGTGAAGAGATTTTAGAAGCTCGTAGGAGCGTGCACAGCGACTATTATCCATATGAATGTAAAATCTGTACAAAAAGCTTCCGATATAAATTCGATTTGAATACGCACAAGATAAGGGAACATGAAATGGTTCGATGTAAGCATTGCTCACAAATATTCGAAAGTAACTCTCTATTGAGTCAGcatattattagttttcataTCGAAATGCGAATATTTAAACCGTTTCGTTGTGACTTCTGTGCGGCCGAGTTTGCATATAATCGCAATTTGAATCGACATCTTCAAACCGTACATGACGATGGAACAATGAGATTTCAATGTGAAATTTGTGAAGATATCTTTCGAAGCGAAGTCAATTTGAAGAGACACATAAGAGCAGAACATCCGACACAGAAGAGAAACTTTAAATGTACCATGTGTTCGAAGTCGTTTCACTTTATGTCGCGCTTAAACCGACATATGATAGTTCATAGCGATGCACGATATCAATGCGACATTTGTCCGAACGAGTACAGCCATAAGGACAATTTGCAGGCGCATATAAGGACTAGCCATAGTAAGAAATCACAAGCAATAGTCGAAATAGCAGCTCAACTGCAAAAGGTATCGCCTTCGCAACCCGAATATATTTGCAAAATTTGCCTCGATGAAATACAAGAAACATATTCCTTCAAGTTAAGATACGATACGAGATTAACGGAGCAACCGACGGACAACGCTACGAAAAATACGAAcgataaaattttaaacgaaGAACAGATAAAACAGGAAGACAACACCGACGAGTTTTCGGAGCTCGTCACTTTGAAAAAAGCGAAATTGTTTGTACAAGAAGTTAAAGAAGAGCCCGAAATCGATATTACGGACAGCTTAAACGAAACGAATCCCCACGAGAAATGCCTTCAAAACAATTTACAATGCAAAATTTGCGTCgatgaaatacaaaaaacatATTCCTTCAAATTGAGATACGATACTAGTTTGACGGAGCAACCGATGGACAACGTTACGAAAAATACGGACGATTTTCATAGCGAACATGAGCACCATGCTGATACGATTATTGGACTTATCAAAACGGAAAAGGACAACGAAGAGTATGAAATATTAAACGAAAAACAGGAAGACACCACCGACGAGTTTTCAGAGCTCGTTACTTTGAAAGAAGAGATATTCTTTGTACAAGAAGTTAAAGAAGAGCCCGAAATCGATATAACGGACAGCTTAAACGAAACGAACCTCAACGAGAACAATTTACAATGTACGAAAATCGTTCAAAGTGAAGAGAATTTAAAAGTCCATAGGAGCGTGCACAGCGACTATTATCCATACGAATGTAAAATCTGTCCACAAAGCTTCCGATgtaaattcggtttgattacGCACAAGATAATGGAACATGGAATGGCTCAATGTAAGCAATGCTCACATATATTAGAAAGTAAATATCTattgagtcagcatatttttcgttttcatATCGAAAAGCAAATATTTAATCCGTTTCGTTGTGACTTCTGTACGGCCGAGTTCGCATATGATTACAATTTGACACGACATCTTCAAACCACACATCCGACACAGAAGGGAAACTTTAAATGTACCATTTGTCCGAAGTCGTTTCGCTTTATGTCGCGCTTAAACCGACATATGATAGTTCATAGCGATCCACGATATCAATGCGACATTTGTCCGAACGAATACAGCCATAAGGACAATTTGCAGGCGCATTTAAGGGATAGCCATAGAAAAAAATCACAGGCGCATTTAAGGACTAGCCATAGAAAAAAATCACAGGCAGCAGTCGAAATAGCAGCTCAACTGCAAAAGGTTTATGATATCCAGAAACGGAACAAAGTTGAGCAGAGAAAGAAGTAG
- Protein Sequence
- MIFLKSLLVNFQVSPSQPEYICKICLDEIQETYSFKLRYDTSLTEQPTDNVTKNTNDLHSEHEPHADTSIGLIKTEKDYEEYEILNEEQIKQEDTTDEFSELVTVKEEKLFVQEVKAEPEIDITDSLNETNLNGNNLQCTGIVQSEEILEARRSVHSDYYPYECKICTKSFRYKFDLNTHKIREHEMVRCKHCSQIFESNSLLSQHIISFHIEMRIFKPFRCDFCAAEFAYNRNLNRHLQTVHDDGTMRFQCEICEDIFRSEVNLKRHIRAEHPTQKRNFKCTMCSKSFHFMSRLNRHMIVHSDARYQCDICPNEYSHKDNLQAHIRTSHSKKSQAIVEIAAQLQKVSPSQPEYICKICLDEIQETYSFKLRYDTRLTEQPTDNATKNTNDKILNEEQIKQEDNTDEFSELVTLKKAKLFVQEVKEEPEIDITDSLNETNPHEKCLQNNLQCKICVDEIQKTYSFKLRYDTSLTEQPMDNVTKNTDDFHSEHEHHADTIIGLIKTEKDNEEYEILNEKQEDTTDEFSELVTLKEEIFFVQEVKEEPEIDITDSLNETNLNENNLQCTKIVQSEENLKVHRSVHSDYYPYECKICPQSFRCKFGLITHKIMEHGMAQCKQCSHILESKYLLSQHIFRFHIEKQIFNPFRCDFCTAEFAYDYNLTRHLQTTHPTQKGNFKCTICPKSFRFMSRLNRHMIVHSDPRYQCDICPNEYSHKDNLQAHLRDSHRKKSQAHLRTSHRKKSQAAVEIAAQLQKVYDIQKRNKVEQRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -