Bcha001557.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- Zbtb41
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:25747757-25748929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0015 0.21 13.4 6.1 1 23 58 80 58 80 0.99 2 11 0.0078 1 11.1 3.1 1 23 86 109 86 109 0.96 3 11 0.0029 0.39 12.5 0.2 2 23 118 139 117 139 0.95 4 11 0.00011 0.015 17.0 2.8 1 23 145 168 145 168 0.95 5 11 9.6e-05 0.013 17.2 2.4 1 23 178 200 178 200 0.98 6 11 0.0013 0.17 13.6 0.2 1 23 206 229 206 229 0.97 7 11 5.7e-06 0.00076 21.0 1.9 1 23 236 258 236 258 0.99 8 11 0.001 0.14 13.9 2.2 1 23 264 287 264 287 0.95 9 11 0.0047 0.62 11.8 1.9 2 23 298 319 297 319 0.95 10 11 0.0002 0.027 16.2 3.0 1 21 325 345 325 348 0.95 11 11 8.7e-06 0.0012 20.4 1.6 1 23 359 381 359 381 0.99
Sequence Information
- Coding Sequence
- atgaaaacagaaaaaagaaagaaacaaCAAGAAGAGGAATACATACCAGGTCCCAATCAATGCTTTACGAAAAAAGAGATAGTTCTCATTCAAGAAGTGAAGCAAGAACCCGAAATCGAAATAAACATGGAAGAAACAGACTTTGACGAAACAATAACGAacactagaaattttaaatgtaccacatgttcgcaactattcgataagaaatttaaattgcatCGACATATGAGAATTCATACAGGAGAAAAACCATTCCAGTGCGAAGAATGTCCGAACAAATATAGCCTGAAGAACTCTTTGACGAGCCATACGCATAGGACACATGCTGATATAACtactagaaaattgaaatgtttaacaTGTTTGAAGTTTTTCGGATATAAAAGTGAGTTGGATGCACATATGGCAGCTCATACAGGAGAAAAGTCCTTTCAGTGCGAACTATGTTCGAAAAAATATCGCTTTAAAACCAGTTTGACGGCTCATATGTACTTGAAACATCCCGATAAACAGACATGTACTGTACAATTTTCTTGTGAGATATGTTCGAAATTTTGTGGACAAAAATCTAAATTGGATGAGCATATGAGAATCCATACAGGAGACAAACCATTCGAGTGCAAAGAGTGTCCGCTCAAATATCGGCTTATAGTCTCTTTGACTGAACATATACGAAATGTACATCTCGGTGTAGGAGGAATGTTTAAATGTGCGacatgttcgaaattattcacACGCAAGAGAAGTTTAGAAACGCATATAAGAATTCATACAGGAGAAAAGCCATTTGAGTGCGAGTTATGTTCGACAAAGTACCGGTATAAGGTCTTTTTGCAGAAACATATGTCCGAAAAACatggcgatagaacaacgtctACTGCGAAATTAACTTGTacgatatgttcgaaattattccATGGGAAATATCAATTGGATCGGCATATAACATTGCACACCGGAGAGAAACCATTTCAGTGCGAATTATGTCCGAAAAAATTTCGCTTACATGGGAATTTGAAAGCACATGTGCGATGTGTTCATGACGGTATAAGAAGACCCATCGCTAAAAGGTTTAAATGTTCAACGTGCTCGAAACTATTCGAACGTAGAGATCGTTTAAATGCGCATATGAGAGTTCATACCAAAAGAAAAGCCAGTAGTTCAATGTGA
- Protein Sequence
- MKTEKRKKQQEEEYIPGPNQCFTKKEIVLIQEVKQEPEIEINMEETDFDETITNTRNFKCTTCSQLFDKKFKLHRHMRIHTGEKPFQCEECPNKYSLKNSLTSHTHRTHADITTRKLKCLTCLKFFGYKSELDAHMAAHTGEKSFQCELCSKKYRFKTSLTAHMYLKHPDKQTCTVQFSCEICSKFCGQKSKLDEHMRIHTGDKPFECKECPLKYRLIVSLTEHIRNVHLGVGGMFKCATCSKLFTRKRSLETHIRIHTGEKPFECELCSTKYRYKVFLQKHMSEKHGDRTTSTAKLTCTICSKLFHGKYQLDRHITLHTGEKPFQCELCPKKFRLHGNLKAHVRCVHDGIRRPIAKRFKCSTCSKLFERRDRLNAHMRVHTKRKASSSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -