Basic Information

Insect: Beris chalybata
Gene Symbol: prg
Assembly: GCA_949128065.1
Location: OX421897.1:93233719-93247909[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 35 6.4 0.4 1 23 201 223 201 223 0.87

2 10 0.05 6.7 8.6 2.4 1 23 229 252 229 252 0.95

3 10 2.5e-05 0.0033 19.0 1.5 1 23 258 280 258 280 0.97

4 10 1.8e-08 2.4e-06 28.9 1.6 1 23 286 308 286 308 0.98

5 10 1.5e-06 0.00019 22.9 1.4 1 23 314 336 314 336 0.97

6 10 9.8e-05 0.013 17.1 3.3 1 23 342 364 342 364 0.99

7 10 0.00082 0.11 14.2 1.2 1 23 470 492 470 492 0.97

8 10 5.3e-05 0.0071 18.0 1.7 1 23 498 520 498 520 0.92

9 10 0.00051 0.068 14.9 1.9 1 23 526 548 526 548 0.97

10 10 0.00035 0.046 15.4 0.2 1 23 553 575 553 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	35	6.4	0.4	1	23	201	223	201	223	0.87
2	10	0.05	6.7	8.6	2.4	1	23	229	252	229	252	0.95
3	10	2.5e-05	0.0033	19.0	1.5	1	23	258	280	258	280	0.97
4	10	1.8e-08	2.4e-06	28.9	1.6	1	23	286	308	286	308	0.98
5	10	1.5e-06	0.00019	22.9	1.4	1	23	314	336	314	336	0.97
6	10	9.8e-05	0.013	17.1	3.3	1	23	342	364	342	364	0.99
7	10	0.00082	0.11	14.2	1.2	1	23	470	492	470	492	0.97
8	10	5.3e-05	0.0071	18.0	1.7	1	23	498	520	498	520	0.92
9	10	0.00051	0.068	14.9	1.9	1	23	526	548	526	548	0.97
10	10	0.00035	0.046	15.4	0.2	1	23	553	575	553	575	0.97

Sequence Information

Coding Sequence: ATGGTCGAAATCGGTCTGACAGGTGAAAATCTGCCGAATTTGTGTCGGCTCTGCCTGCAAGTGGACGATTTTATTGTCGACATTTTCCACCGTTTGGACCCGAATCCGTGCAAGAAACCACTGCCCGAACGAATCTACGATTTATTTCAAGTGAAGGTTACAAAAACCGATGGCTTGCCAACAAACATCTGCCACAGCTGCTTATACTACACGGAGACTTTTTCGGAATTCAAAGAAAACATACGAAAATGCGAATCTCGTTTACAAAACTATATCGCCTCGCTGGGAATTCTTGGCAGTATAAATACCCCGGTGGCCGCgaacgaaataaaaaaagaattcaacGACGAGCCGTATAACAACATCGAGGACTATGCTGAAATTATACGTGACGAAAACTGTCTAGTCACAGTGGTTGACCCGAATCAGGATTACGATAGTTCGGACGATAGCTTCTCGATGGATTCAGATAATGACTTTCCGGTGCCGAAGTCTCAACCGAAAGAAAAACACAACGGATTGGTTGGTTTCAATACGATCATAGACGACAAAAGTTGTCAGGTTTTCCCCGAGAGTCAGGAGAATGTTGATAAAAATGTCTATCTATGTCAGTACTGTGACATGGCTTTTACTGCGCAAGCCGATTGTGCTGAACATGAAATGAGTCACGATCAGATCAATCCGCACAATTGCAATTATTGTGTGTATAAATGTTCCAGTCGACAAGTCCTGATTGCACACATTAAGGAGGGTCATGACAACGATCGACCTTACATATGTGTTCAATGCCATAAAGGATTTGGTAGACGATCAGATCTGAAGAAACACACAATCGTTCATACTGGTGTCCGACCGTTCACTTGCCCTGTTTGCAATAAGAATTTCTCGCGAAATACAAATTTAACGAAGCATCTTCGCATTCACACCGGACTCAAGCCACATGTTTGCCAAAAATGTCCGCGATCGTTTACAACAACTGCGGATCTGGTACGACATCAACGCGTTCATAATGATAGCAAACCGTTTCAATGTATGAAATGCCCGTCCGCCTTTACACGCAAGGATAAACTGATGCATCACGAACGCACGCATATTCGGAGAGAGCATCAAACCGCATCACTAATGTCGAGCAATACAGGCGACTCGCTAGGAACATCAAACGAAGGTGACATAATCTTCGACACCGAGCACATAACAATCTCTTTGGATCCATACACCGATGTTAATCAGGTGGAAAATAGCACGCTAAATTCGAATACATCGGCTGATTCGCTACACACCACACCGAAAAAGCAGACTGTCGATCTAACTCTACCGTCATCCAATCAGCAAGACATGCGTCTCCAGGAGCATGTAACTGGAGATGTTGTCGTCAATATTAATTCGAGCGACGACTACAATAACATCTATTCCTGCGACTATTGCCCGCAAAAATTCTCACTAGTCTCAGCCCTAATTCACCATAACAGCACGCATAACATCCAACGCGGTCATATCTGCTCGATTTGTTCGAAACGCTTTGTAAGAAAGCGTGAACTACAACGACATTCGGTTATTCACACAGGTGTGAAACCATACGCTTGTCGTTTCTGTAGTAAGCGTTTCAATCGTAAGGACAAAGTAGTGCGACACGAACGTATTCATACTGAGGAGAAGTTCAATTGTACGCAATGCGAATTGGGCTTTTCGCGACAGGAAGCACTAGATATGCATCTAAAAGTACATGAGCTGAACAGAAGCAGCGCATCACAAGGTCTCGATACACTTGGAGCCAAGAACAGTAACAATTTTCAATTGTTGGCGAACATTCCAAATGTTTTGGCGCCCGGATTTATGCCGCAAATGAATTTTTACAATGAATTACGATCCGAAGAATAG
Protein Sequence: MVEIGLTGENLPNLCRLCLQVDDFIVDIFHRLDPNPCKKPLPERIYDLFQVKVTKTDGLPTNICHSCLYYTETFSEFKENIRKCESRLQNYIASLGILGSINTPVAANEIKKEFNDEPYNNIEDYAEIIRDENCLVTVVDPNQDYDSSDDSFSMDSDNDFPVPKSQPKEKHNGLVGFNTIIDDKSCQVFPESQENVDKNVYLCQYCDMAFTAQADCAEHEMSHDQINPHNCNYCVYKCSSRQVLIAHIKEGHDNDRPYICVQCHKGFGRRSDLKKHTIVHTGVRPFTCPVCNKNFSRNTNLTKHLRIHTGLKPHVCQKCPRSFTTTADLVRHQRVHNDSKPFQCMKCPSAFTRKDKLMHHERTHIRREHQTASLMSSNTGDSLGTSNEGDIIFDTEHITISLDPYTDVNQVENSTLNSNTSADSLHTTPKKQTVDLTLPSSNQQDMRLQEHVTGDVVVNINSSDDYNNIYSCDYCPQKFSLVSALIHHNSTHNIQRGHICSICSKRFVRKRELQRHSVIHTGVKPYACRFCSKRFNRKDKVVRHERIHTEEKFNCTQCELGFSRQEALDMHLKVHELNRSSASQGLDTLGAKNSNNFQLLANIPNVLAPGFMPQMNFYNELRSEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00203821;
90% Identity: iTF_00203821;
80% Identity: -