Basic Information

Insect: Beris chalybata
Gene Symbol: -
Assembly: GCA_949128065.1
Location: OX421896.1:28674865-28692210[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.6e-07 7.5e-05 24.2 1.4 2 23 423 444 422 444 0.97

2 8 1.6e-05 0.0022 19.6 2.2 1 23 450 473 450 473 0.96

3 8 0.00035 0.047 15.4 3.4 1 23 483 505 483 505 0.98

4 8 3.8e-05 0.0051 18.4 1.1 1 23 511 534 511 534 0.97

5 8 3.6e-06 0.00048 21.6 1.7 1 23 544 566 544 566 0.98

6 8 6.9e-07 9.2e-05 23.9 1.6 1 23 572 595 572 595 0.98

7 8 4.2e-06 0.00056 21.4 2.8 1 23 605 627 605 627 0.99

8 8 7e-05 0.0093 17.6 1.2 1 23 633 656 633 656 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.6e-07	7.5e-05	24.2	1.4	2	23	423	444	422	444	0.97
2	8	1.6e-05	0.0022	19.6	2.2	1	23	450	473	450	473	0.96
3	8	0.00035	0.047	15.4	3.4	1	23	483	505	483	505	0.98
4	8	3.8e-05	0.0051	18.4	1.1	1	23	511	534	511	534	0.97
5	8	3.6e-06	0.00048	21.6	1.7	1	23	544	566	544	566	0.98
6	8	6.9e-07	9.2e-05	23.9	1.6	1	23	572	595	572	595	0.98
7	8	4.2e-06	0.00056	21.4	2.8	1	23	605	627	605	627	0.99
8	8	7e-05	0.0093	17.6	1.2	1	23	633	656	633	656	0.98

Sequence Information

Coding Sequence: ATGTGTCTCCAGCAACACATAAAGCAGGAGGCCGAAATTGAAATAAGTATGGAAGACGGTCCTGTTAACAAGGTTGATGTCGACGAGGAACAAATGAAGAGTGATGCGCAATGTTCGGTATTTGTTGTGATTAACGAGGACGATAAAGTGATCACATTTGATGACGGCAACAATGCGAAGGACGGTTATAGAAATCACAATGTGCCCAAGAAtaggataaaaaaaatacaagtgCGTAAACGCGGAAGAGAAGTGAAAGGCGAGTGGCCCGATGAGAAAATTTCCAAACTTATAAGCCTTGTCGAACAACGGCCATTTCTATGGGACGCCAGCCTTCCCAACTATCGCGTATCAAAACCACAGCTATGGGATGAGGTAGCGACAGAGCTCGGTGGCAATGAAATTGGCTCTTATTGCAAATCGAAGTGGCAAGGTTTGCGTGTCCAATTTAAAACCAATTTGGCCTTAGTGCAAAAAGGAAAATGTACCAATGGAACGAAAGAGTCCGTTCGTGTGCATTGGCGATTTTTTAAAGCGATGCAATTCATTGAAACGAGCGATATCAAAAATGTTACGGAATCAACGACGACTATAAATTtgGATGAGGAGAGTACTTCCGATACGCAAACCGATATGTCCATTGGTGAGCCGTCATCATCTGGCGTTAGCAAACGGCGCAAACGCACCACGTTTCGTCCGATTCAAACGCCACCAGAGGTCCAAACTCTTCAGTCCGAAACGATAAAGGACGTTGCGGATGCAGCAATTCAGATGATGTGCCGTAACGACGAACACAGTGCTTTCGCTTATCATATCGGCGCTGAATTACATCGTCTTCCGAGCGACGCTGCGCAAATACTAAAATGTCGGTTGACTCGTACTTTGCTGGATTTCTGGGAAGAACGAACGTTATCTCCTAACGATGGATTTCCCGATAATATTTGTTCCAATTGCTTGGACAAAATTCGTGTATCGTACAGATTCAAATTAAAATGTGAAAAGTCGGAATCTATTTTGAAGCAATTAAGGGAAAATGGGAAAACTGTAAACGATCTAATCAATTCAGAAAAGATCGAAGATCCTGCAACATTAAGTGATAATCAACTTGAGCAGCCTGTCTACGTAGAGATTTTGAAGAATACGACTATTAATGAAGAAGTATCCATTGTTCAAGAAATAAAGCAAGAACccgaaattgaaataaatatggACGAAGACGACTTTAAATCAATTGATTCCGATAAGGATTGCTTTAAAAACGATTTACAATGCTCCGTATGTACGAAAATTTTCAAGAGTAAAAgcaatttgaaaattcatacGCGAGTTCATACTGCAGAAAAACCATTTCAGTGCGAACTTTGTCCGAAAAAATTTCGTTATCGCAACAATTTGAAAAGCCATAACCGAAATGCACATTGTCCTGCACCAACAAACACTGGAAAATTTAAATGTGCGTTATGCTCTACATTTTGTCGAAATAAAAGTGCTTTTACTCGACATATGATAGTTCATGCCGAAGAAAGGCCATTTAATTGCAAACTTTGTCCGAAAAATTTCCGAGCTGAGAAAAGCTTAACGGAACATATGAAAACGTTACATTCCGACGGCGAAACGACTAATAGAAAATTTGAATGTCCGACATGCGCTAAACTATTCAGACGTAAAGATCACCTGAGTGAGCATATGCGAATTCATACGGGCGAAATGCCATTTCAATGCGAAGTTTGTGATCAAAAATATCGATATAAGACGAATTTGAAAAGACATATGGAAACGGGTCATTCCGATGGATCAACGATTAATAGAAAGTTTAAGTGTGGTGTATGTTCGAAGGAATTCAAGAGTCAGTGTAGTCTGAACGAGCATATGCGTATTCATACGGGAGAAAAACCGTTTCAATGCGAAATATGTTTACGGAAATTTCGATATCGGCAgaattataaaatccatatagAAACGGCACATAACGATTGA
Protein Sequence: MCLQQHIKQEAEIEISMEDGPVNKVDVDEEQMKSDAQCSVFVVINEDDKVITFDDGNNAKDGYRNHNVPKNRIKKIQVRKRGREVKGEWPDEKISKLISLVEQRPFLWDASLPNYRVSKPQLWDEVATELGGNEIGSYCKSKWQGLRVQFKTNLALVQKGKCTNGTKESVRVHWRFFKAMQFIETSDIKNVTESTTTINLDEESTSDTQTDMSIGEPSSSGVSKRRKRTTFRPIQTPPEVQTLQSETIKDVADAAIQMMCRNDEHSAFAYHIGAELHRLPSDAAQILKCRLTRTLLDFWEERTLSPNDGFPDNICSNCLDKIRVSYRFKLKCEKSESILKQLRENGKTVNDLINSEKIEDPATLSDNQLEQPVYVEILKNTTINEEVSIVQEIKQEPEIEINMDEDDFKSIDSDKDCFKNDLQCSVCTKIFKSKSNLKIHTRVHTAEKPFQCELCPKKFRYRNNLKSHNRNAHCPAPTNTGKFKCALCSTFCRNKSAFTRHMIVHAEERPFNCKLCPKNFRAEKSLTEHMKTLHSDGETTNRKFECPTCAKLFRRKDHLSEHMRIHTGEMPFQCEVCDQKYRYKTNLKRHMETGHSDGSTINRKFKCGVCSKEFKSQCSLNEHMRIHTGEKPFQCEICLRKFRYRQNYKIHIETAHND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -