Bcha029753.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421896.1:116362427-116363833[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00016 0.021 16.5 1.4 1 23 151 174 151 174 0.95 2 10 8.6e-05 0.011 17.3 0.9 3 23 186 206 184 206 0.97 3 10 0.00045 0.06 15.0 1.3 1 23 210 232 210 232 0.97 4 10 5.3e-05 0.0071 18.0 1.6 1 23 238 261 238 261 0.97 5 10 7.2e-06 0.00095 20.7 4.7 1 23 270 292 270 292 0.99 6 10 1.3e-06 0.00018 23.0 1.5 1 23 309 331 309 331 0.95 7 10 9.4e-07 0.00013 23.5 5.4 1 23 337 360 337 360 0.98 8 10 0.01 1.3 10.8 2.0 2 23 369 390 368 390 0.97 9 10 4.2e-05 0.0056 18.3 1.7 1 23 396 419 396 419 0.98 10 10 9e-07 0.00012 23.5 2.8 2 23 430 452 429 452 0.96
Sequence Information
- Coding Sequence
- ATGGACGCAAACacttttcataaatttctgATATTCAATTTTCAGGTTTCACCTAACGATGCCTTTCCCGACAAGATTTGTAGCGATTGCGTCGACCAACTTCATCAAACGTTTGCTTTCAAGGTAAAATGCGAAAATTCTGAAGCCATTATCAGGCAATTGAAGGTCGATGGTCTAACTGCGAACGAGTTGGAGAGTACTCCCTACGCATATAAGCACTACTCTGAAGTGAGCGTTGcactaataaaaacagaaataACAGGAAACTATGAGACAATATGCGATGAAAACTTTGACGAAAAATTACGGCATGAACTTGCGAAACAAGAAATATCGATCGTGCAAGAAGTAAAGCAAGAACCCGAAATCGAGCTTAGAGCGGAAGATGATTGTACCAAGACTGATTCAAACAACATAGAACCGTTGGCAATTAAGACCGAGAAACCACTATACAAATGTGATCATTGTTCAAAAGAGTACGCCTATCCAACCGACTTAACAGTGCATACGCTACTCTTTCATCCTGCCGAGCATGTAGCTAACGATTCGACAAACTGTGACATTTGTTCCGCACAATTCTCTGAAAGATTCCAACTAATCAAACATATGAAAACTCATGCGAACCATTATCCATGTCCGCTTTGTTCGAGAATATTCGATCGAAAATATTCACTACAATGTCATATCATAAGTCATTCGAACGAAAAGGAATTTAAATGTGAAAATTGTTCGAAACTTTTTCGATACAAAAAAGATTTGTCGGTGCACATGCAACTAGAACACACCGATGAATCTGTGAACAGCAAATTTAAATGTACTACATGTTCCACTTCATTCGAACATAAAAGCGTTTTGAAAAAGCACATGCGAATTCATACGGTCGAAAGACAATCAGATTCCGATAAGACAACGATTAAAGTCCAACATATATGTCCGATATGTTCGAAAGTATTCAAAACTAGAACTACTTTGACGCGGCATCAAGTTGTTCATGCCGACGAAATACCGTATCAGTGCAATATTTGTTCGAAAAAATGCCGATTTAAATCGAATTTGAAGGCTCATATGCGAATGAAGCATGATGATGAAACTACGAACAAGATAAGATGTCCGGTATGTTCGAAAGTGTGCCTTAGTAAATGTGATTTAGACCGTCATATGATCGTTCATACGCAAGAAAAGCCTTATCAGTGCGAAATTTGTCAAATGAGATTCCGATATACGAACAGTTTGAAAAATCACGAACGAAAAGCACATATCGATGGGACAAGTAAAGAAAAACCGATTCATTGTAAACTTTGTCCGAAAAGGTTTGCAGATAAAAGAAATTTAAGAGCTCATATGCGAAGATTTCATGGTATTACGAGAAATAGTGAAGCAAAAGGCGTTAAAAACGATTCAAACTAG
- Protein Sequence
- MDANTFHKFLIFNFQVSPNDAFPDKICSDCVDQLHQTFAFKVKCENSEAIIRQLKVDGLTANELESTPYAYKHYSEVSVALIKTEITGNYETICDENFDEKLRHELAKQEISIVQEVKQEPEIELRAEDDCTKTDSNNIEPLAIKTEKPLYKCDHCSKEYAYPTDLTVHTLLFHPAEHVANDSTNCDICSAQFSERFQLIKHMKTHANHYPCPLCSRIFDRKYSLQCHIISHSNEKEFKCENCSKLFRYKKDLSVHMQLEHTDESVNSKFKCTTCSTSFEHKSVLKKHMRIHTVERQSDSDKTTIKVQHICPICSKVFKTRTTLTRHQVVHADEIPYQCNICSKKCRFKSNLKAHMRMKHDDETTNKIRCPVCSKVCLSKCDLDRHMIVHTQEKPYQCEICQMRFRYTNSLKNHERKAHIDGTSKEKPIHCKLCPKRFADKRNLRAHMRRFHGITRNSEAKGVKNDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203805;
- 90% Identity
- -
- 80% Identity
- -