Bcha029760.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- Znf672
- Assembly
- GCA_949128065.1
- Location
- OX421896.1:116389216-116394998[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.4e-06 0.00098 20.7 0.7 1 23 161 184 161 184 0.97 2 11 2.9e-05 0.0038 18.8 1.6 3 23 191 211 190 211 0.98 3 11 0.00039 0.052 15.3 4.2 1 23 217 239 217 239 0.98 4 11 0.0013 0.18 13.6 1.1 1 23 247 269 247 269 0.93 5 11 4e-06 0.00054 21.5 1.3 1 23 275 297 275 297 0.98 6 11 0.15 20 7.1 0.6 1 23 303 325 303 325 0.94 7 11 1.6e-05 0.0021 19.6 1.2 1 23 331 353 331 353 0.97 8 11 2.7e-06 0.00036 22.1 1.8 2 23 359 380 358 380 0.97 9 11 0.00047 0.063 15.0 3.4 1 23 386 408 386 408 0.97 10 11 8.6e-06 0.0011 20.5 2.3 1 23 413 435 413 435 0.95 11 11 0.00024 0.032 15.9 3.3 1 23 441 464 441 464 0.97
Sequence Information
- Coding Sequence
- ATGGATTTCAATTCACCAATATGTCGTGTGTGTTTGAACAACGCAATGGAATTAATCGACTTGGAGACCGCAATGGAAGAAACCTCACCGCTTACAGTGCTGGAAAGTTTCAATGCTTGTACCCAACTAAATGCTGTGGTCGACGACGAACTTCCAAAATATTTATGTATTTCCTGCAATGATAATTTACGTTTGGCCTATGATTTTGTGCGGAAGGCCCAAGATGCGGACATTCTGCTCCGGGTTAAATTAAAAGAAGGCGTCTATGAACTGGTACACGACGACGAACAGTATGAACAAAACGAATCCGAAATGAAGCTGAACGAAGATGACGTTTCTGTTGAAATGATCTATCAAGACTTCGACGAAGATTTCGGTGACGAAAGACACGAAACTATGAAAATCGAACGTTTGTCGGAGGATGAAGTTGTTGAAGAGAATCCGCATAACATGGACGGGTCAGATCACGCTGAATTGCCGTTCGAATGTAGTCAATGCAAGAAACTGTTCAGAACGGCGGATGATTTAGAAGCACACTTGAAaaaatcgcataaaaaaaaGAAGCTGTTGTGTAATATTTGTGGAAAGACGTGTGCAACGCGAAGTTCGCTGAGCTCGCATATACTGCAGCACAAAGGCGAGAAACCGTTCACGTGCAAGCAATgcgataaaaaatatttcacgaAAAATGGACTACACTTACACATGAGCGTTCACGAGGGCGACaagccctcaaaatttttgtgttcGATATGCGGAAAAGGTTTTGCTACGAAACAACGTCTCGATGTTCATCACTTTGTCCATACCGACGAAAGGAATTACAATTGCTCGTATTGTGaaaaaaaattcgccACACCGTTTCGTTTACGCAATCACATTCGAATTCATACCGGCGAAAGGCCCTTCGAATGTATAACGTGTGGCCTGAAATTTGCACAGGCAAACGCTCTCAAGTGCCACGAACGAATTCATACGGGCGAGCGCCCGTACGAATGTAAAATCTGCGGCAAGCGATTCAATCAAAATACAATACTTAAAACGCACATGACACTGCACACGGGAAAGACCGTTAAATGTCCGTCGTGTGATAAGAAATTCAGTCGTCCGTCATGCTTAATTCTCCACCAACGCGAACATACTGGCGAGAAACCCTACGCATGTTTCAAATGTCCGAATCGATACAAGCAAAAAAGCCATTTGGATCGGCATCTAGACACGCATTTCGGCATCAAACATCAGTGTTCGGTTTGTGGCAAGGAATATTCGAAACGTTCGTCGCTCAAAATTCATATGTTCGATCATTCGGAAGAGAAACCGTTTCACTGTGGCGACTGCTCAGCGACGTTCACTAGAAGGGATAAGTACAAAgcacatttgaaaaaaatgcacGGTAAAATTTTCGGCAATAATGCGGAAATTATAAAAGTTAAGGAAGAGACCGCATTGAATTATAATGAAGAGCTTATTATCGAATTGCAATCGGATTATACGGCCGAAGATGATATTGAAAAAGGGGCGGCGTATCAAATTATCGAAATACCATAG
- Protein Sequence
- MDFNSPICRVCLNNAMELIDLETAMEETSPLTVLESFNACTQLNAVVDDELPKYLCISCNDNLRLAYDFVRKAQDADILLRVKLKEGVYELVHDDEQYEQNESEMKLNEDDVSVEMIYQDFDEDFGDERHETMKIERLSEDEVVEENPHNMDGSDHAELPFECSQCKKLFRTADDLEAHLKKSHKKKKLLCNICGKTCATRSSLSSHILQHKGEKPFTCKQCDKKYFTKNGLHLHMSVHEGDKPSKFLCSICGKGFATKQRLDVHHFVHTDERNYNCSYCEKKFATPFRLRNHIRIHTGERPFECITCGLKFAQANALKCHERIHTGERPYECKICGKRFNQNTILKTHMTLHTGKTVKCPSCDKKFSRPSCLILHQREHTGEKPYACFKCPNRYKQKSHLDRHLDTHFGIKHQCSVCGKEYSKRSSLKIHMFDHSEEKPFHCGDCSATFTRRDKYKAHLKKMHGKIFGNNAEIIKVKEETALNYNEELIIELQSDYTAEDDIEKGAAYQIIEIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203798;
- 90% Identity
- iTF_00203798;
- 80% Identity
- -