Bcha001177.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:17394971-17399510[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.085 11 7.9 0.0 3 19 198 214 196 217 0.93 2 12 0.00016 0.021 16.5 3.9 2 23 239 261 238 261 0.97 3 12 6.9 9.2e+02 1.9 0.7 1 21 334 354 334 355 0.87 4 12 0.00014 0.019 16.6 0.6 1 23 363 385 363 385 0.98 5 12 1.1e-05 0.0015 20.1 2.5 2 23 390 412 389 412 0.97 6 12 1.9e-06 0.00025 22.6 1.4 2 23 419 440 418 440 0.98 7 12 5.9e-07 7.9e-05 24.1 0.8 1 23 446 468 446 468 0.95 8 12 6.2e-06 0.00083 20.9 1.1 1 23 474 496 474 496 0.97 9 12 1.8e-06 0.00024 22.6 1.1 1 23 502 524 502 524 0.98 10 12 0.00014 0.018 16.7 0.5 1 23 530 552 530 552 0.98 11 12 0.0003 0.041 15.6 4.0 1 23 558 580 558 580 0.99 12 12 2.6e-05 0.0035 18.9 1.3 1 23 586 608 586 608 0.98
Sequence Information
- Coding Sequence
- ATGGAAACTTCAATTCATCAAATGTGTCGAACTTGTTTGGGTTCTGGAACGGCATTGGTTCCGCTGTATGCAAAGCAAATTTCCTCGGCTACTTACACAGTGGCGGAAATGCTTAGAAATTTCACGACAGTCGTGGTATCAGAACACGATGGCTTACCGGAAAAGGTTTGTTTGAGTTGCGTAAGTGAAATAAATCGTGcgtattttttcaaaataaaatgcgaAAATTCCGAGGAAACGCTTCAGCAGTATTTAAAAGAGATTATACCAGAAGATGATGGTACCATCACGGTAATCAAGgaagaaacaaaaattcttgATCGAAAGTTCGATGAGATTGTACCCGATAAAACAGTAAGCATTTTCGAAGACAAGCCCAGTCCAGCCGAAAACGAAGATGATTTTCTCGCAGAACAAATGGCAGAAATTTTAAGTGAAGAAGATCATGAATTGATCGAAATTAACGATGAAGTCGAAGATGAAAACGAAGATAATGATGGTCATCAGGAAACGTACGAATTAAGCGATTATACCGATAGCAATTACGAAGATGAGGCTCGGCAAGCTCAAACGAAACTAATAATTCTGGCATGCGAGGACTGTTTCAATACATTCGAAAGTAAAGAAGAATTCGAAGCCCATTCGGCGGTTTGCTTAAAAGAGAGCGGAAACGATACGACTGATGCGAATATGGCTCGATCGAAAGAGCTAAAAAAATGCCCAATATGTCCGATGGATTTCGTTCATCAGAAGAATCTCGATAAGCATATTAAGAAATGCCATCCGGTTTTTACTGAAACAAACGTGAAGATCAAAACAGACGATTCAAATGCCAGTAATGACGACGATTCGTTAACGAAACCAACGGATACGATTGACAAGAGTGACGACGAAGATGACAATGAAGACGACGAAGAGAAAGATGAAGTCCGTTTAATTGAAATTTCACACGAAGATGCGCTCCTTAGGCACGATCCGTCCATCTTACCATGCGGTGAATTTACATGTATTCGATGCGGAGCTGGTTTTGCAAAGAAAAAATCTCTCGATTGTCATATGAAGATCAATAAGTGCACGCAAGAGCAGTTTTCCTGTAAAATATGTAAGCGGGTTTTCATCAACGACCTGAACTTACTTGAGCACTTGAAATCGCACGAGTCCAACAACCAATGTAAAGTGTGTTCGAAAACGTTTTCGAATCAGGAGAAATTGCAGTCTCATACGAAAAAAGTACATAaagaaatcgttaaaaatcagtGTAAATTTTGCGGAAAGgCCTTTTCAATGCTGTCGACTCTCAAAGATCATCTTCGTACGCATAGCGGCGAAAAACCATTTCTCTGTTCGATATGCGGCAAAGGATTCAGTCAAAATACGAACCTGAAACAGCATGTTATGCGTCACAATAATCTAAAACCGTTCGCATGCAATCAATGCGAATGTTCATTCGTTAGCAAAGGTGAATTGAACGCGCATATTCGCAAGCATACCGGCGATCATCCGTTCTCATGCGATATGTGCGGTTCGTCATTTACAACATCCAGTTCGTTGGTCAAACATAAACGAATTCATACCGGCGAACGTCCGTATGCCTGTGAGTTTTGTCCAATGCGATTTTCAGCTCTCGGTACATTGAAGAATCATCGACGTACGCATACCGGCGAGAAACCTTTCAAATGCGAATATTGTTCGCGATCGTTTGCACAGAAAAGCGATTGTGTTACGCACTTGCGTAGTCATACCGGCGAACGTCCGTATATTTGTTCGATTTGTGGCTGGTGCTTTCAGCAGTCGGGCATTTTAAAAACTCATATGAAAACACATGAAGGCGGTAAAATACACGACGGTAAAATGCAGAAGCCGAGAGCTCGAAAGgtggagaaaaatgaaatggAAGAAGATATTTTAATGGAAGTCGAATAA
- Protein Sequence
- METSIHQMCRTCLGSGTALVPLYAKQISSATYTVAEMLRNFTTVVVSEHDGLPEKVCLSCVSEINRAYFFKIKCENSEETLQQYLKEIIPEDDGTITVIKEETKILDRKFDEIVPDKTVSIFEDKPSPAENEDDFLAEQMAEILSEEDHELIEINDEVEDENEDNDGHQETYELSDYTDSNYEDEARQAQTKLIILACEDCFNTFESKEEFEAHSAVCLKESGNDTTDANMARSKELKKCPICPMDFVHQKNLDKHIKKCHPVFTETNVKIKTDDSNASNDDDSLTKPTDTIDKSDDEDDNEDDEEKDEVRLIEISHEDALLRHDPSILPCGEFTCIRCGAGFAKKKSLDCHMKINKCTQEQFSCKICKRVFINDLNLLEHLKSHESNNQCKVCSKTFSNQEKLQSHTKKVHKEIVKNQCKFCGKAFSMLSTLKDHLRTHSGEKPFLCSICGKGFSQNTNLKQHVMRHNNLKPFACNQCECSFVSKGELNAHIRKHTGDHPFSCDMCGSSFTTSSSLVKHKRIHTGERPYACEFCPMRFSALGTLKNHRRTHTGEKPFKCEYCSRSFAQKSDCVTHLRSHTGERPYICSICGWCFQQSGILKTHMKTHEGGKIHDGKMQKPRARKVEKNEMEEDILMEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -