Basic Information

Insect: Beris chalybata
Gene Symbol: -
Assembly: GCA_949128065.1
Location: OX421894.1:776908-780349[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00013 0.018 16.7 3.1 1 23 157 180 157 180 0.97

2 14 5.6e-05 0.0075 17.9 0.6 2 23 187 208 187 208 0.97

3 14 0.00017 0.023 16.3 1.3 1 23 214 236 214 236 0.98

4 14 0.047 6.3 8.7 7.6 2 23 271 292 270 292 0.96

5 14 0.00071 0.095 14.4 1.5 1 23 338 361 338 361 0.96

6 14 0.025 3.4 9.5 1.2 1 21 368 388 368 389 0.95

7 14 0.091 12 7.8 0.9 1 23 398 421 398 421 0.95

8 14 3.4e-05 0.0045 18.6 3.1 1 23 439 461 439 461 0.97

9 14 1.5e-07 2e-05 26.0 1.8 1 23 468 490 468 490 0.98

10 14 2.4e-07 3.1e-05 25.4 1.3 3 23 502 522 500 522 0.96

11 14 1.4e-05 0.0019 19.8 3.3 1 23 528 550 528 550 0.99

12 14 8.6e-07 0.00011 23.6 2.2 3 23 558 578 556 578 0.97

13 14 1.1e-07 1.4e-05 26.5 1.6 1 23 584 606 584 606 0.99

14 14 0.00037 0.049 15.3 0.1 1 23 612 636 612 636 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00013	0.018	16.7	3.1	1	23	157	180	157	180	0.97
2	14	5.6e-05	0.0075	17.9	0.6	2	23	187	208	187	208	0.97
3	14	0.00017	0.023	16.3	1.3	1	23	214	236	214	236	0.98
4	14	0.047	6.3	8.7	7.6	2	23	271	292	270	292	0.96
5	14	0.00071	0.095	14.4	1.5	1	23	338	361	338	361	0.96
6	14	0.025	3.4	9.5	1.2	1	21	368	388	368	389	0.95
7	14	0.091	12	7.8	0.9	1	23	398	421	398	421	0.95
8	14	3.4e-05	0.0045	18.6	3.1	1	23	439	461	439	461	0.97
9	14	1.5e-07	2e-05	26.0	1.8	1	23	468	490	468	490	0.98
10	14	2.4e-07	3.1e-05	25.4	1.3	3	23	502	522	500	522	0.96
11	14	1.4e-05	0.0019	19.8	3.3	1	23	528	550	528	550	0.99
12	14	8.6e-07	0.00011	23.6	2.2	3	23	558	578	556	578	0.97
13	14	1.1e-07	1.4e-05	26.5	1.6	1	23	584	606	584	606	0.99
14	14	0.00037	0.049	15.3	0.1	1	23	612	636	612	636	0.92

Sequence Information

Coding Sequence: ATGTCCGTTTTGAATAACGGAAGTATCGATAAAGTATGTCGAACGTGTTTGTATAAAGGCGAGGATATGAACTTTCTAGATGGAATTGTGGAAAGCTTTCAAATTTCACTGGGCGACGTTTTAATGTGTTGCTCAAAGATAACAGAAAGCAATGAACTCCCAAATCAGATATGCTCAGATTGTACAATGCAGCTGCTCAACGCATACAACTTTAAACTGAAGTGCGAAGAAAGCGACAAAGTTCTCGTCAATTTTTTATCAAAGAACAGCCAGGAAATAGAACCCTACGAAAGTGATCTGGAGCAAAATGATGACGTTTCTCAAGATCCTATCCATATTCAATTAATAGACACAAAAGAAGCACAGACAGATTCGGTTCAAGGCCCGCCTGAAGACAATCAAGTCAGAATCAAACCGGAAATTACAATTGCATTTGCCGACGAGATCGTTTCGGATGCTAAGAATAAATTCCGCTGCGAAGTTTGTCAAAATACTTATACTCATAAGAAGTCCCTAATTAGACACTTGAATAAAGCACATAATGCCAACATTTCGAATCGTTGCAAGATTTGTAATAAAGTATTCGCCAAGGGTACTCAGCTTGAATCTCACATGGCAAAACATGAAAACGACGAAGTGTTTACTTGTACCATATGCGAAGAAGAGTTTGAAAGCAAACTCCAACTGAAAACACATCGAACGACACATCTGCGAAAACTACAAATGAAAGTAGCTGGAAAGAATAATGTAAAACTGGAATCGAAAGAAGCGGATACTTCGCTGTGTTCGCCGAACGGACCGAAAATCATACAATGTAAAATTTGTCATGAGCATTTCACGAAATTCGAAAAGCTCCGACAGCATTTAACTCATCACACAACGAAAGAACCGTTTGACTCAAAACTTTACTCGATTTCAACTGAATGCGGAATTGAACTATCTCTGAGCGATTCGGAAACCGATAACGATGATGACGAAAACGATGATTTTGATCACAAGCCTACCAAACAGTATGTATGCGAAATTTGCTACAAAGTATTCAATCGACGCTATAAAATTCTATATCATCAAAAAAACGATCATGACCATGTCGAGCTACAACATCAATGCACGAAATGTTTATGGAAATACGCAAGCAAGCAACTTCTATCCAGTCACTTGAAATCACAATGTGATAATGAGTACAAACTGTTTTCGTGTAATGAGTgcaatatgaaatttatgtgGACTGAGAATCTTGAGCTGCACAAGAACAGTCGCCATTCGAGCGAAGCGATCGAAAAAAACAGAAAGGAACTGAAAACAGAAAAGGGTTTCGTTTGTGAGACGTGCAATAAGAAATTCGTCCGTTACGAACATCTCGAGCGGCATAAAACCATTCATTTGCCGAACGATAAGAAGTTCGAGTGTACAATATGTGAAAAGAGATTCAATCGGAAGGATAATATGCGATCGCATATGCGAATTCATAATGCAAATCGGGATAAGGACGATAAACATTTGTGCGTGTATTGTGGCCGCGGTTTTACGAACTCATCGAATTTGATTGTGCATATGAGACGTCATACTGGTGATAAACCTTACAAATGTGATTTTTGCGGCAAGGGTTTTCCGAGATCGTCCGATCTACAATGTCATCGAAGGACACATACTGGCGAGAAACCATGTCTTTGTACGATTTGTGGAAAAGGATTCTCACGATCAAATAAGCTCGTGCGGCATATGCGTATTCATACTGGTGTCCGACCATACAAATGTACCTACTGCGATCGTGCTTTCACACAGTCCAACGACCTGACACTACACATACGCCGCCACACAGGTGATAAACCGTACGTTTGTGGAGTATGCGGTGAACGTTTCATACAGGGTACTGCGCTTCAGACGCATCGTCGTGTCAAGGAACACTACGAAGGTCCGAACCATAGTGCACCATTTTCTAGCATCAGCGTGAATAACCCGAACCGGATGAATTTTGCGAATCGTGTTGATCAAATTGGTATGCCAAAAGTCGATACTGCTCAGCCAGTTGAAATAAAACCTGTTGGACGGGCCGGAAACTTTCGAACGTCTTGTATTAGTGCCACCGCTGAACGGGATGAAACTAAAACATCTGTTTTAATTGATACCGCTGCTACAGAGAGTGAGCTTAGTCACGCTATGCCCTTTATCCAATTGGTGTACCACGATGAACAGTTTTAA
Protein Sequence: MSVLNNGSIDKVCRTCLYKGEDMNFLDGIVESFQISLGDVLMCCSKITESNELPNQICSDCTMQLLNAYNFKLKCEESDKVLVNFLSKNSQEIEPYESDLEQNDDVSQDPIHIQLIDTKEAQTDSVQGPPEDNQVRIKPEITIAFADEIVSDAKNKFRCEVCQNTYTHKKSLIRHLNKAHNANISNRCKICNKVFAKGTQLESHMAKHENDEVFTCTICEEEFESKLQLKTHRTTHLRKLQMKVAGKNNVKLESKEADTSLCSPNGPKIIQCKICHEHFTKFEKLRQHLTHHTTKEPFDSKLYSISTECGIELSLSDSETDNDDDENDDFDHKPTKQYVCEICYKVFNRRYKILYHQKNDHDHVELQHQCTKCLWKYASKQLLSSHLKSQCDNEYKLFSCNECNMKFMWTENLELHKNSRHSSEAIEKNRKELKTEKGFVCETCNKKFVRYEHLERHKTIHLPNDKKFECTICEKRFNRKDNMRSHMRIHNANRDKDDKHLCVYCGRGFTNSSNLIVHMRRHTGDKPYKCDFCGKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGVCGERFIQGTALQTHRRVKEHYEGPNHSAPFSSISVNNPNRMNFANRVDQIGMPKVDTAQPVEIKPVGRAGNFRTSCISATAERDETKTSVLIDTAATESELSHAMPFIQLVYHDEQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00202836; iTF_00203772;
90% Identity: iTF_00202836; iTF_00203772;
80% Identity: iTF_00202836;