Bcha029349.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Beris chalybata
Gene Symbol
-
Assembly
GCA_949128065.1
Location
OX421896.1:109223085-109229196[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.4e-07 0.00011 23.6 0.7 2 23 200 221 200 221 0.97
2 16 1.3e-06 0.00018 23.0 0.8 1 23 227 249 227 249 0.99
3 16 4.7e-07 6.2e-05 24.4 2.5 1 23 255 277 255 277 0.99
4 16 0.00029 0.038 15.7 2.0 1 21 283 303 283 306 0.90
5 16 7.8e-05 0.01 17.4 2.7 1 23 314 336 314 336 0.97
6 16 0.0035 0.46 12.3 1.2 2 23 345 366 344 366 0.95
7 16 2.3e-05 0.0031 19.1 3.1 1 23 372 394 372 394 0.98
8 16 3.3e-05 0.0044 18.6 0.0 1 23 401 423 401 423 0.98
9 16 0.00017 0.023 16.4 1.3 1 23 431 453 431 453 0.96
10 16 0.0049 0.65 11.8 1.2 1 23 460 483 460 483 0.91
11 16 0.046 6.2 8.7 0.0 2 23 492 514 492 514 0.91
12 16 0.0049 0.65 11.8 1.2 1 23 537 560 537 560 0.91
13 16 0.046 6.2 8.7 0.0 2 23 569 591 569 591 0.91
14 16 0.0049 0.65 11.8 1.2 1 23 614 637 614 637 0.91
15 16 0.046 6.2 8.7 0.0 2 23 646 668 646 668 0.91
16 16 0.013 1.8 10.4 3.3 2 23 674 695 673 695 0.93

Sequence Information

Coding Sequence
atgtttttaaaattttcctcGAATGTATGCCGGGTTTGTTTGGAAGAGCAGGCAAACATTGCACTGTTTAAAAATAGCGGAAATgacgaaaagtttaaaacctGCACCCGACTTGAgGTTTCCGAAGACGACGGTCTGCCATCCTCGCTCTGTAAAAAATGCTTCGATAACCTGAAAACCGCCTATGAATTTTACACTCAAAGTATCGCATCCGATCAACACTTGCATTCGTTCGTCTCGTCGATAAATACCCAGTTTGCTGCCAAAGTGGTTAACCTTCAGCAAAATACGTCAGTAGAAAAGGTTCCGATCGAGATACCACTAAAAACTGACGATCCGCTTCCAGAAGAAGCCGCTAATGGTATAACAGAAATAGCCGAAGCGGATGATGGTATCGCCAAAGAAGAATACAATTGCAACAGTTCGGAAACGAGTTTAATTGAAGTTGACGAGTTCCAACAAATTCAGGAACTGTCCGAAATCTACGAAGAAGAATCCAATGAATTCGATGACGAGGCTCCTCCGGCGGAATATTCGATTGATGGAAACGAAAAAGAAACGGTCACTGATTCGAAATATTCCCAAGACGACTCAAATACTTGTGTCGAATGCAATAAATCGTTTTCATCGCGAGCCAACCTTATGCGTCATATTTTGAGTCATGCAGCCGTGAAGCCGTATAAGTGTACCGTTTGCGACGGAACCTTCACACAAAACGGTTCGTTGCAGCAGCACATGTTGAAGCATACCGGCGAACGACCATTTAAGTGTGATGTTTGCGAGAAGCGATTCACTCGAAAGCGTTTGTTGGAAATGCATCAGCGGACGCATACTGGCGAGAAACCGTATCATTGCACCGAATGCGGGTTGTCGTTTACCGTGAAAGAAGGACTACGGcGCCACAATTTGTTTAAGCACGCTTCAGTCGCCAGGGAAAGTCACACCTGTACGATATGCGGAAAGAAACTCTTCTCGAAGTATACGTTGAATATACACATGAATTTACACGGTTATGATAAGCGCGAACGGTTGCAATGTAAGCTCTGCTCTAAAACGTTTCTCACAAAGTACGGTTTACGAAATCACGAGCAAGGACACGACGACTACAAGAACTATTCGTGTCACATTTGTTCGCAGTCGTTTACTCGAATGGCCAGTCTAACGCTTCACCTGAAAAAGCACGAAAACCAACAGAAACAGTTTGAATGTGAGATTTGTGATGCGATTTTTGCGCGTCGAAGTCAATTAGATGTGCACTTACTAAGTCATGAGGACAATGGCGAACAGAATTTCGCATGTCGAATTTGTAAAAAGACTTTCACGCGAAGGCTGAACGTACTGAAACATCTGCAAGGACATCGAAAACCAACGGAAATATTCAATTGCGCCAGTTGTAATATCACGTACAATACCAAACGGAATCTGAAGCTACATCTCGTCAATTTTCACAAGGAAACTGTTCCCGACTTGAATACGTGCGATATTTGTTTAATTCCGTTTGTTAAGGCGCGAGATTTGAATCAACATACGGCAGAAGTTCACGACTGTATGGACGGCAAGCTGAACGTACTGAAACATCTGCAAGGACATCGAAAACCAACGGAAATATTCAATTGCGCCAGTTGTAATATCACGTACAATACCAAACGGAATCTGAAGCTACATCTCGTCAATTTTCACAAGGAAACTGTTCCCGACTTGAATACGTGCGATATTTGTTTAATTCCGTTTGTTAAGGCGCGAGATTTGAATCAACATACGGCAGAAGTTCACGACTGTATGGACGGCAAGCTGAACGTACTGAAACATCTGCAAGGACATCGAAAACCAACGGAAATATTCAATTGCGCCAGTTGTAATATCACGTACAATACCAAACGGAATCTGAAGCTACATCTCGTCAATTTTCACAAGGAAACTGTTCCCGACTTGAATACGTGCGATATTTGTTTAATTCCGTTTGTTAAGGCGCGAGATTTGAATCAACATACGGCAGAAGTTCACGACTGTATGGACGGCAAGTGTGAGGAGTGTGGAGAACATTTCACTTCGAAGGTAGTGTATCAGAGACATTGCCGAGAACATGATGTTTTGAGTATTGTTTGA
Protein Sequence
MFLKFSSNVCRVCLEEQANIALFKNSGNDEKFKTCTRLEVSEDDGLPSSLCKKCFDNLKTAYEFYTQSIASDQHLHSFVSSINTQFAAKVVNLQQNTSVEKVPIEIPLKTDDPLPEEAANGITEIAEADDGIAKEEYNCNSSETSLIEVDEFQQIQELSEIYEEESNEFDDEAPPAEYSIDGNEKETVTDSKYSQDDSNTCVECNKSFSSRANLMRHILSHAAVKPYKCTVCDGTFTQNGSLQQHMLKHTGERPFKCDVCEKRFTRKRLLEMHQRTHTGEKPYHCTECGLSFTVKEGLRRHNLFKHASVARESHTCTICGKKLFSKYTLNIHMNLHGYDKRERLQCKLCSKTFLTKYGLRNHEQGHDDYKNYSCHICSQSFTRMASLTLHLKKHENQQKQFECEICDAIFARRSQLDVHLLSHEDNGEQNFACRICKKTFTRRLNVLKHLQGHRKPTEIFNCASCNITYNTKRNLKLHLVNFHKETVPDLNTCDICLIPFVKARDLNQHTAEVHDCMDGKLNVLKHLQGHRKPTEIFNCASCNITYNTKRNLKLHLVNFHKETVPDLNTCDICLIPFVKARDLNQHTAEVHDCMDGKLNVLKHLQGHRKPTEIFNCASCNITYNTKRNLKLHLVNFHKETVPDLNTCDICLIPFVKARDLNQHTAEVHDCMDGKCEECGEHFTSKVVYQRHCREHDVLSIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-