Bcha001538.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:25417866-25462744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0057 0.77 11.6 0.1 2 23 57 78 57 78 0.97 2 25 0.00034 0.046 15.4 1.1 1 23 84 107 84 107 0.94 3 25 0.022 2.9 9.8 0.4 1 23 120 143 120 143 0.97 4 25 0.0074 0.98 11.2 2.6 1 23 153 176 153 176 0.97 5 25 0.025 3.4 9.5 0.1 2 23 309 330 309 330 0.97 6 25 0.00022 0.03 16.0 0.3 1 23 336 359 336 359 0.94 7 25 0.0055 0.74 11.6 0.6 1 23 424 447 424 447 0.96 8 25 0.0042 0.56 12.0 3.3 1 23 457 480 457 480 0.97 9 25 0.0094 1.3 10.9 0.6 1 23 485 508 485 508 0.97 10 25 0.022 2.9 9.7 1.1 2 23 527 548 526 548 0.96 11 25 0.01 1.3 10.8 0.3 1 23 552 575 552 575 0.97 12 25 0.00015 0.02 16.6 3.0 2 23 586 607 585 607 0.98 13 25 0.013 1.7 10.5 0.5 2 23 613 635 612 635 0.95 14 25 0.00031 0.041 15.6 0.8 1 23 638 661 638 661 0.97 15 25 0.0018 0.23 13.2 1.0 3 23 666 686 664 686 0.97 16 25 1.7e-05 0.0022 19.5 2.4 1 23 692 715 692 715 0.98 17 25 4.6e-05 0.0062 18.2 0.7 2 23 733 754 732 754 0.97 18 25 0.048 6.4 8.7 3.5 2 23 761 783 760 783 0.96 19 25 0.00027 0.036 15.7 1.1 1 23 792 815 792 815 0.98 20 25 3.8e-05 0.005 18.4 0.9 2 23 823 845 822 845 0.97 21 25 0.00019 0.025 16.2 1.1 1 23 851 874 851 874 0.96 22 25 0.0056 0.75 11.6 0.1 2 23 928 949 928 949 0.97 23 25 0.00073 0.098 14.4 0.7 1 23 955 978 955 978 0.94 24 25 0.065 8.7 8.3 0.1 2 23 1038 1059 1037 1059 0.96 25 25 0.022 2.9 9.8 0.4 1 23 1101 1124 1101 1124 0.97
Sequence Information
- Coding Sequence
- ATGGATCATGGAACATCGAACCAATTGGAGCGGACTAGTTTACCAGAGCATTCCACTACAATGGCAGAAATATCCATCGTGCAAGAAGTAAAGCAAGAACCCGAAATTGATATTAATATTGACGGAGAGTGTGAAGCTCTATGCGATGCCGAAGAAAAATCGAGAAATGAATGTTCAATATGTTGGAAATTATTCACTTCTAAAATGGCTTTGGATGATCATATCGAAATTCATACAGAAGAAAAACCACATCAATGCGAAATTTGTCCAAACAAATTTAATGTAAAGACAAATCTGACGAAACATTTGGAAGAAGACCATGGCGATGAAACATCGAAAAAGAATGATCGAGAACGATATAAATGCGAACTTTGTCTGAATAAATTTCGGCTCGAGGTCAACTTGTTGGAGCATATGCAAAACGATCATAGTTCTGGTGTACCGAACGACGGAAAGTTTGAATGCacgatatgttcgaaattattcacCGCTAAACATTCTGTACATATTCATATGAGAGAAGTTCATCGTGAAAAACCATTTCAATGTGAACTATCACCGGATGATGACCTTCCCGACCAAATTTGTTGCGATTGTCTCGATAAAATATGTCGGTcgtatattttcaaattaaaattgagCAAATACGAAGCTATTATGAAACAAATATACGTAAAAGTGATCAAGTCGATGAGTTCTTCCAACGAGTATGAAAACGATGCCGAAATGCATGTTGATCTaatcaaaatagaaaatacacaacattttgaaaaatcaattGACCAATTGGAGCGGACTAGTTCGCCTGAGCATTGTACTACAAAGGCAGACATATCCATCGTGCAAGAAGTAAAGCAGGAAACCGAAATTAATATTGAAGAAGAGTGTGAAGCTCTATGCGATACCGAAGATACATCGAGAAATGAATGTTCAATATGTTTGAAATTATTCACTTCTAAAATGGCTTTGGATGAGCATATCGAAATTCATACAGCAGAAAAGGAATATCAATGCGAAATTTGTCCAAACAAATTTAATGTAAAGACGAATTTGACGACACATTTGGAAGAAGACCATGGCGgtgaacattttgaaaaatccatTGACCAGTTGGAGCGGACTAGTTTACCAGAGCATTTCACTACAAAGGCAGAAATATCCATCGTGCAAGAAGTAAAGCAGGAAACCGAAATCGAAATTAATATTGAAGAAGAGTGTGAAGCTCTATGCGATACCGAAGAAACATCGAAAAAGAATGATCGAAAACGATATAAATGCGAACTTTGTCTGAATAAATTTCGGCTCAAGGTCAACTTGATGGAGCATATGCTAAACGATCATAATTGTGGTTTACCGAACGACAGAAAGTTCGAATGCacgatatgttcgaaattataCACCACTAGACATTCTGTGCATATTCATATGAGAGAAGTTCATCGTGAAAAACCATTTCAATGTGAAGCTTGtccaaataaatttcttttccgGTCTAATTTATGGGAACATATGCGAAAAGATCATCCCTGTGAGCCATTGACTGTAAAATCGGTtcgcattaaaaaaattgccaaaattaaATGTGAGATATGTTCGAAATTAATCTCGAAAAACCATTTGAAAGCACATATGAACACGGTCCATGCAGTAGGATATCAGTGCGAAATTTGCctaattgaatttcaattcaagCTTGATTTGAGAGATCATATGATAAAGGAACATGATCCCAGTTCTTCGAATAATGATATCATTAAATGTTCGAAATGTCGGAGATTATTCACCAATAAAAGAGGATTGAGTACGCATATGAGAACTCATATAGTTAAAAAAGTCAAGTGTACGACGTGTTCGAAAGTATTGAATACTAAAGGTACCTTGTACTGGCATAATAGACTGGTTCATGGAGGATTTCAGTGCGAACTTTGCCCAAAAAAGTTTGAACTCAAGAACACTTTAAGAGAACATTTGCTAAAGGACCACGAAACGTACGGCTGTACACTTTGTTCGAAAGTATGTATCGATAAAAATGCTTTGATTGAACATATGAGATTCCATTCAGGAGAGAAACCATTTCAGTGCGAAGTATGTCCAAATAATTTTCGAACGGAGCACAATTTGAAGAATCACATGAAAAGTATGCATGATGTTAATTCAGAGGATACAGAAAAAAGTTCGAAGAAtggtttaaaattgaaatgtgaAATATGTTCGAAACTATTTATCAATGAACATCAATTGATTGAACATATGAGAATTCATTCAGGAGAGAAACCAATTCAGTGCAAAGCTTGTCCGAAAAAATTTCGAACACTGCAATGTATGAAAATGCACGTGAAAAGAATGCATAATCCGAAATCAgaggaaaaaatatttcagtGCGAAATTTGTCCAAGTAAATATGTACGTAAGAACGTTTTGAGACGACATATGCAAAAGAACCATGGTCCTATATCATCGAAGAATAAATGTCCGATTTGTTCGAAAACATTCGCTTTTAAAACTGAAATGTATAGACACATTAGAATCTTTCATAGCAGCGAAAGATTATTTCCATGCAAAATGTgtccaaacaaatttaaattcaaggcCGACCTGAGAAAACATTTGAGCATGGATCATGGAACATCGAACCAATTGAACCGCACTAGTTTACCAAAGCATTCCACTATAAAGACAGAAATATCTATCGTACAAGAAGTAAAGCAAGAACCCGAAATCGATATTAATATTGACGGAAAGTGTGAAGCTCTATGCGATGCCGAAGAAAAATCGAGAAATGAATGTTCAATATGTTGGAAATTATTCACTTCTAAAATGGCTTTGGATGAGCATATCGAAATCCATACAGAAGAAAAACCACATCAATGCGAAATTTGTCCaaacaaatttaatgaaaagaCGAATTTGGCGAAACATCTGGAAGAAGACCATGGCGgtgaacattttgaaaaatccatTGACCAGTTGGAGCGGACTAGTTTACCAGAGCATTCCACTACAAAGGCAGAAATATCCATCGTACAAGAAGTTAAGCAAGAACCCGAAATCGAAATTAATATTGAAGGAGAGTGTAAAGCTCTTTGCGATGCCGAAGAAACATCGAGAATTGAATGTTCAATATGTTTCAAATGGTTCACTTCTAAAATGGCTTTGGATGATCATATCGAAATTCATACAGAGGAAAAACCACATCAATGCGAAATTTAtccaaacaaatttcatttaaaaacaaatttcgagaAACATTTGCGAGAAGACCATGGTGACGAAACATCGAAAAAGAATGATCAAGAACGATATAAATGCGAACTTTGTCTGAATAAATTTCGGCTCGAGGTCAACTTGTTGGAGCATATGCAAAACGATCATAGTTGTGGTGTACCGAACGACGGAAACTTCGGCATCGTTTTACCAGGACCGCAAGGATCACCGCATGGATTACAGGGATCGCAAGGCGGACAACAATCGAGCGGAACACAAGAATCGTTACCTTCGCTGAGCATAGACAATGCTATGGATAGTATTTTAAAAGAACTGTTGGAGTCATCTTCATCATCTTCGGATGAGGAGTTTCTAGTAATGAAGGAGCGAGAAAAGCACCATCGGGTGCAAAAGTTTCTCGAAGATGTTATGCGGAGTTACAGCGCGACAGAGTTCGTTTTAGATGGGTCGGAAAGCTCATTGTACTGCGGAAAAAAGAATTGTGGTTCAACGTTTAAGGAAGCAGGGTAA
- Protein Sequence
- MDHGTSNQLERTSLPEHSTTMAEISIVQEVKQEPEIDINIDGECEALCDAEEKSRNECSICWKLFTSKMALDDHIEIHTEEKPHQCEICPNKFNVKTNLTKHLEEDHGDETSKKNDRERYKCELCLNKFRLEVNLLEHMQNDHSSGVPNDGKFECTICSKLFTAKHSVHIHMREVHREKPFQCELSPDDDLPDQICCDCLDKICRSYIFKLKLSKYEAIMKQIYVKVIKSMSSSNEYENDAEMHVDLIKIENTQHFEKSIDQLERTSSPEHCTTKADISIVQEVKQETEINIEEECEALCDTEDTSRNECSICLKLFTSKMALDEHIEIHTAEKEYQCEICPNKFNVKTNLTTHLEEDHGGEHFEKSIDQLERTSLPEHFTTKAEISIVQEVKQETEIEINIEEECEALCDTEETSKKNDRKRYKCELCLNKFRLKVNLMEHMLNDHNCGLPNDRKFECTICSKLYTTRHSVHIHMREVHREKPFQCEACPNKFLFRSNLWEHMRKDHPCEPLTVKSVRIKKIAKIKCEICSKLISKNHLKAHMNTVHAVGYQCEICLIEFQFKLDLRDHMIKEHDPSSSNNDIIKCSKCRRLFTNKRGLSTHMRTHIVKKVKCTTCSKVLNTKGTLYWHNRLVHGGFQCELCPKKFELKNTLREHLLKDHETYGCTLCSKVCIDKNALIEHMRFHSGEKPFQCEVCPNNFRTEHNLKNHMKSMHDVNSEDTEKSSKNGLKLKCEICSKLFINEHQLIEHMRIHSGEKPIQCKACPKKFRTLQCMKMHVKRMHNPKSEEKIFQCEICPSKYVRKNVLRRHMQKNHGPISSKNKCPICSKTFAFKTEMYRHIRIFHSSERLFPCKMCPNKFKFKADLRKHLSMDHGTSNQLNRTSLPKHSTIKTEISIVQEVKQEPEIDINIDGKCEALCDAEEKSRNECSICWKLFTSKMALDEHIEIHTEEKPHQCEICPNKFNEKTNLAKHLEEDHGGEHFEKSIDQLERTSLPEHSTTKAEISIVQEVKQEPEIEINIEGECKALCDAEETSRIECSICFKWFTSKMALDDHIEIHTEEKPHQCEIYPNKFHLKTNFEKHLREDHGDETSKKNDQERYKCELCLNKFRLEVNLLEHMQNDHSCGVPNDGNFGIVLPGPQGSPHGLQGSQGGQQSSGTQESLPSLSIDNAMDSILKELLESSSSSSDEEFLVMKEREKHHRVQKFLEDVMRSYSATEFVLDGSESSLYCGKKNCGSTFKEAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -