Bcha020041.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- clz9
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:92479768-92481763[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-09 2.2e-06 28.5 0.0 1 40 14 54 14 58 0.90 2 2 9.1 6.6e+03 -1.8 0.1 18 26 160 168 156 168 0.88
Sequence Information
- Coding Sequence
- ATGGTACGAAATTACAAGCGAAAGGGGACCAGAAGTGGAGATGAAGAGGCAATGAAATCTGCAATAAAAGAAGtcttaaaaaaaaccttgtctATTCGAAAATCTGCAGATAAATTCGGCGTCAAGCCATCAACTCTTGAAAGTCGTATTAAGAACGTTCATAAAAAAACATCTGGCGATAACAACATTGCCGAAAGATCTTTTGGTTCCAAGTATACTGCAAATCAAGTATTTTCTATCGCAGAAGAGCTTCTTTTAAACAAATACATCACAGAATGCTCAAGAATGCACTATGGATTAACACTTGAGAATTTTAAGAGGCTTGCCTACGAATATGCACTTGCaaataaacttaattttccACGTAGCTGGAATCGCAACAAAATGGCAGGAAAGGATTGGCTAGAGGGTTACCGTAAACGTAACCCAAATTTGAGTTTGCGAAAACCTGAGAACACCAGCGCAGCTAGATCGTATGGTTTTAATAAGGCAGCGGATCATTTTATGGATGGTGCTCCAGAAGGCAGCTTAGGAGTTTCTAATAAGAGCGGATGGATAAATTCTAATATATTTGTTGAAGTTCTAAAGCATATCCAGAAGCATACGATGTGCTCCAAAGCGAACCCTATTTTACTCCTAGCCGACAACCATGAAAGCCATATCTCAATAGATGCAGTAAATTATGCTCGTGAAAACGGGATAGTATACCTGTCATTCCCACCACACACAACACACCGCCTCCAACCATTGGATGTGGGCGTATTTGGGCCTTTTAAGTCAAAATTAAAGATTGCTTTTAACGATTGGCATCTAAATAATCCAGGGAAAACGCTTAATATTTACAATATTCCGAGATTAGCTAAAATTGCCTATTTTCAAACCTTTACCGGTAAAAACATTACAAGTGCTTTTGAAAAGACAGGAATATGGCCATTCAACAAACTTATATTCAGCGACGATGATTTTGCGCCCGTTCAGGTTTACCAATCATGCTCCATAGCAGATTTACAAGAGAACATTGTTCCAACCATGCCAGAAGATACTGATGCATCCATCGACACACAACCGATTTCATCGCCTCCATTACCTTATTCTCCGCATCAGCCACAAAATTGCGATATTCATACAGCATCAACATCCAAAGGACCGGTATCTCCCGAGATGGTTCGACCATACcctaaagtaaataaaaatatgtctacaaaatcaaaaaaaggaaaacaactAGGTAAATCGCGAATTTATACTGACACACCAGAAAAGAATAGACTTGAGGAAATTGAAGAAGCTAAAGACATTAAGAAAAAGGAGCAAGAACAAAAAAAGAAGGCAAGAGAAATAAAGCGTGTCTTGAGTTTGTTATCAAAAACATATAAGACAGCAAAtccaaaaagaaagaagaaaactaTAAAAGAGACTGATAGTGAGAGTGATACTGAAATGAATATAAGAGAAAGCTCTACTTCTCCCATCGATGAAGTAGTGTTTGAAGAATCTGATATCGAAATCGAAACTCCCGTGTTAGCGGAAAGTATAACAGAAGGAACCTTTTTGTTAATTAAGTTGGAAAAAAACCAGTCAGTTTTGTATTACGTCGGACAGATGGCTACCAAATACTGCTCTACCGAATACAAGGTTTCATTTTTAAGGAAAAAGGATGGTTCTTGGAAATTTGTCTTTCCAAACATCAAAGATGAAGGGACAATTTACTTCTCAGATGTAGTTTCAATACTACCGCAACCCAAATCTGCTTCTACAGCAAGGACCAGTAGTATCTTCACCTTCGGCTTTGCTAAAGACCTCTCAGCTTACAATGTGCAGTAA
- Protein Sequence
- MVRNYKRKGTRSGDEEAMKSAIKEVLKKTLSIRKSADKFGVKPSTLESRIKNVHKKTSGDNNIAERSFGSKYTANQVFSIAEELLLNKYITECSRMHYGLTLENFKRLAYEYALANKLNFPRSWNRNKMAGKDWLEGYRKRNPNLSLRKPENTSAARSYGFNKAADHFMDGAPEGSLGVSNKSGWINSNIFVEVLKHIQKHTMCSKANPILLLADNHESHISIDAVNYARENGIVYLSFPPHTTHRLQPLDVGVFGPFKSKLKIAFNDWHLNNPGKTLNIYNIPRLAKIAYFQTFTGKNITSAFEKTGIWPFNKLIFSDDDFAPVQVYQSCSIADLQENIVPTMPEDTDASIDTQPISSPPLPYSPHQPQNCDIHTASTSKGPVSPEMVRPYPKVNKNMSTKSKKGKQLGKSRIYTDTPEKNRLEEIEEAKDIKKKEQEQKKKAREIKRVLSLLSKTYKTANPKRKKKTIKETDSESDTEMNIRESSTSPIDEVVFEESDIEIETPVLAESITEGTFLLIKLEKNQSVLYYVGQMATKYCSTEYKVSFLRKKDGSWKFVFPNIKDEGTIYFSDVVSILPQPKSASTARTSSIFTFGFAKDLSAYNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01127303; iTF_01127279; iTF_01127295;
- 90% Identity
- -
- 80% Identity
- -