Bcha013888.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:34047579-34047956[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-09 2.1e-06 28.5 0.1 6 39 18 51 15 54 0.88
Sequence Information
- Coding Sequence
- ATGTCAAACCCTATAAAACGTCCAATCCAGCAATACTATGCAAATAGCATGAGAATTGCTATTTCTGCACATCGAAGTAAAAGTTTAAGTGTTCGGAAGGCTGCGGTTAAATCTGGGGTACCTAGATCAACGCTCCAGGATCATCTGCTAGGAAAAGTCCGGGAAGTATGCCAAAAAATGGGTCAAATTAAAATCGTCAATTGGTGCATTTCCTTGGCTAAATGTGGATTTCCATTAAAGCCAGAAGAGCTTCAAAACACCGCACAAAAAATGATGAAAGaagataaacgaaaaaatcctttcaaagaCGATAGACCAGGAAAGAAGTGGTATGCATCTTTCATAAAACAACATCCCCAGCTTTCTTCACGTATTTAA
- Protein Sequence
- MSNPIKRPIQQYYANSMRIAISAHRSKSLSVRKAAVKSGVPRSTLQDHLLGKVREVCQKMGQIKIVNWCISLAKCGFPLKPEELQNTAQKMMKEDKRKNPFKDDRPGKKWYASFIKQHPQLSSRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202499; iTF_00202483; iTF_00202495;
- 90% Identity
- iTF_00202499; iTF_00202495;
- 80% Identity
- -