Bcha037852.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421897.1:93685468-93688675[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-12 3.8e-09 37.4 0.1 9 39 15 47 15 53 0.85 2 2 0.72 5.3e+02 1.7 0.0 18 28 91 101 75 104 0.82
Sequence Information
- Coding Sequence
- ATGAACGCTTCCAAGTATATAAGGCATACCGAGAAAAATGTTTTGGATGCTATACAAGAGATGGAAAAAGGGATGAGCTTAAGAAAAGCCTCCAGAAAATATAATATTCCCCGTTCTACGTTGTATCGTAAGGTAAAGGGCGGTTGTAAGATTGCAACATCATTTGGTGTTCCTACTCGTTTTACATCGGAGCAAGAAATGCTTATAGTTAGATGGGTATTATCGATGGCTGAGGCAGGGTTCCCTATCTCTAGAGAGACATTTATGTATAGTGTTTATAAATTAGCACAAGAGTATGGTATTACATTTGGGGAAGAATCACATAGACCTGGACGCAGATGGTATGAACTATTCATGGCTAGACATCCTGAAATAGTACAAAGAACCAGTCAAAACCTGACAGCTCAGAGAAGAGCCGTTAAGCAAGAGGACCTGAACCGCTGGTATAAGGAGGTGGAATCATATTTTGCACAAAATAATCTACAAACAGTATTTCAAGACCCTTCCAGAATATTCAATACAGATGAAACAGCTTTCTTTCTAAATCCCAAACCCGGAAAAGTGTTGGCTGCAAAGGGCTGTAAAAGTGTTTATACTGCAGCAGGAGGGGATGAGAAATTGAATATGACAGTCTTGGTAACTGCAAACGCGGCAGGAACTCTGGCTCCTCCCATGGTGGTGTATAGATACACGAGAATTCCACCGCTAATTGCAGCAGCCATGCCACTTGACTGGGCGATAGGCAAAAGTGAAAATGGGTGGATGACCCAGGAGTTATTCTTTGAGTACATAGCCAATTTTTTCGAACCTTGgctaacaaaaaacaaaatagaaagacctgtagttttttttatggatggGCACATCTCACACTTGTCTTTCCATCTAAGCcaattttgtaaagaaaaacaaattgtcCTAGTGGCTTTGCTACCAAACGCAACACACTTACTTCAGCCCATGGATGTTGCGGTATTCCACACACTAAAGGCATCATGGAGGCAAAGAGTTGCCGATTGGAAAATATCTAATGAAGGTGCACAGGTAACAAAACAAGTATTTCCTAAAATCCTTAAATCAGTTCTAGAACATCTTCCCAAAGACACAATAAGAAGTGGCTTTAAGGCATGTGGGCTCGTGCCATGGGACCCCaatgttgtaaaaatttcagaaacACCAAAAGTCGTCTCCCAAACTGTAAATCTCCATAAATTAGAAGATGCAAAAACTTTTCTAAAAACTTTAGAAAACAAAATCACTGAATCTAAATTGGGGGAATTCCAAAGGAATGTTGGAGACTGGATAGGAGATGTTAAGGATTATTCCTTGTTTCACATGTGGATGAAAGCGAAGCAAGACGTTTTAGAATTCCGCCAGCCTGAGGCTGGCCTGTCACCTTCCACAATACAAACTTTAAATGATAGTACAGGACAGTCTCCAGATTGTAGTGGTTCATTAACACCTTATCCTGCCCACTTACAATCTCCAGGCCCATCAACTGCTAATGCCCACATCATGCAAACACCACGCCCATCAACGAACAGTGATCCTGTTACGATGCAAACTTCAACTACCGCGGTCTCAATCGATCCTTCAATTCCTACACCCTTCAAGAGGACATTATTTTGGCCAGGAGAAAGTAGcacggcgaaaaaaaaaattaagaaagaaaaattaccaGCTGTAGTAACTTCGCCGCAGATGATAGCCTATTTTTCACAGAAAGAGGGAGCCAAGCAGCAAAAACttcaagaaattgaaaatagaagAGCTTTACGACGTCAAAAACTTGAAGAAGCCGAGAAAAAGAAGAAGGCTAGACAACAAGAATCAACATCTTCTTCATCCTCGTGCGCTTCTTATGCCGAATCTGACAAGTCACCAATGACAGGATATGATAGCGGTAGTACCGATTTTGGAGATCCGTATGACGGCGATACCAATTTAAAAGAAGGCGATTTCGCAATTGTTCAATTTGCTGGAGGAAAACGGGGTAAAACATCGTTCAAATATCTTTGCGTATTGCAACAAATTTGCGAAGATGGAATACGGGTTCAAGCGCTGAGGTCAAACGGAAGCAACAAAATGTTTGTGATTATCGAAAATGATATAAGTCTCATCTCCCCTCAGCAAATCGAATGCATTGTTCCAGCTccagaacCAATAATATCAGTCGAGTCAGCCCAGGCCGTTAGAAGATTTCACGATACAACGAACGAATGTCTTCTTGGGCTGGCTAATCTTGACAGGGACACAACAACATGGGATCCAATGCTGATCCATTTGTTTCTGAACAAAATCAACAAGTAA
- Protein Sequence
- MNASKYIRHTEKNVLDAIQEMEKGMSLRKASRKYNIPRSTLYRKVKGGCKIATSFGVPTRFTSEQEMLIVRWVLSMAEAGFPISRETFMYSVYKLAQEYGITFGEESHRPGRRWYELFMARHPEIVQRTSQNLTAQRRAVKQEDLNRWYKEVESYFAQNNLQTVFQDPSRIFNTDETAFFLNPKPGKVLAAKGCKSVYTAAGGDEKLNMTVLVTANAAGTLAPPMVVYRYTRIPPLIAAAMPLDWAIGKSENGWMTQELFFEYIANFFEPWLTKNKIERPVVFFMDGHISHLSFHLSQFCKEKQIVLVALLPNATHLLQPMDVAVFHTLKASWRQRVADWKISNEGAQVTKQVFPKILKSVLEHLPKDTIRSGFKACGLVPWDPNVVKISETPKVVSQTVNLHKLEDAKTFLKTLENKITESKLGEFQRNVGDWIGDVKDYSLFHMWMKAKQDVLEFRQPEAGLSPSTIQTLNDSTGQSPDCSGSLTPYPAHLQSPGPSTANAHIMQTPRPSTNSDPVTMQTSTTAVSIDPSIPTPFKRTLFWPGESSTAKKKIKKEKLPAVVTSPQMIAYFSQKEGAKQQKLQEIENRRALRRQKLEEAEKKKKARQQESTSSSSSCASYAESDKSPMTGYDSGSTDFGDPYDGDTNLKEGDFAIVQFAGGKRGKTSFKYLCVLQQICEDGIRVQALRSNGSNKMFVIIENDISLISPQQIECIVPAPEPIISVESAQAVRRFHDTTNECLLGLANLDRDTTTWDPMLIHLFLNKINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202471;
- 90% Identity
- iTF_00202471;
- 80% Identity
- iTF_00202471;