Bcha031806.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421897.1:33963590-33971497[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.2e-12 3.1e-09 37.6 0.1 9 39 15 47 15 50 0.84 2 3 9.3 6.8e+03 -1.9 0.0 20 30 49 59 47 60 0.84 3 3 0.56 4e+02 2.1 0.0 18 28 91 101 75 104 0.82
Sequence Information
- Coding Sequence
- ATGAACGCTTCCAAGTATATAAGGCATACCGAGAAAAATGTTTTGGATGCTATACAAGAGATGGAAAAAGGGATGAGCTTAAGAAAAGCCTCCAGAAAATATAATATTCCCCGTTCTACGTTGTATCGTAAGGTAAAGGGCGGTTGTAAGATTGCAACATCATTTGGTGTTCCTACTCGTTTTACATCGGAGCAAGAAATGCTTATAGTTAGATGGGTATTATCGATGGCTGAGGCAGGGTTCCCTATCTCTAGAGAGACATTTATGTATAGTGTTTATAAATTAGCACAAGAGTATGGTATTACATTTGGGGAAGAATCACATAGACCTGGACGCAGATGGTATGAACTATTCATGGCTAGACATCCTGAAATAGTACAAAGAACCAGTCAAAACCTGACAGCTCAGAGAAGAGCCGTTAAGCAAGAGGACCTGAACCGCTGGTATAAGGAGGTGGAATCATATTTTGCACAAAATAATCTACAAACAGTATTTCAAGACCCTTCCAGAATATTCAATACAGATGAAACAGCTTTCTTTCTAAATCCCAAACCCGGAAAAGTGTTGGCTGCAAAGGGCTGTAAAAGTGTTTATACTGCAGCAGGAGGGGATGAGAAATTGAATATGACAGTCTTGGTAACTGCAAACGCGGCAGGAACTCTGGCTCCTCCCATGGTGGTGTATAGATACACGAGAATTCCACCGCTAATTGCAGCAGCCATGCCACTTGACTGGGCGATAGGCAAAAGTGAAAATGGGAATGTTGGAGACTGGATAGGAGATGTTAAGGATTATTCCTTGTTTCACATGTGGATGAAAGCGAAGCAAGACGTTTTAGAATTCCGCCAGCCTGAGGCTGGCCTGTCACCTTCCACAATACAAACTTTAAATGATAGTACAGGACAGTCTCCAGATTGTAGTGGTTCATTAACACCTTATCCTGCCCACTTACAATCTCCAGGCCCATCAACTGCTAATGCCCACATCATGCAAACACCACGCCCATCAACGAACAGTGATCCTGTTACGATGCAAACTTCAACTACCGCGGTCTCAATCGATCCTTCAATTCCTACACCCTTCAAGAGGACATTATTTTGGCCAGGAGAAAGTAGcacggcgaaaaaaaaaattaagaaagaaaaattaccaGCTGTAGTAACTTCGCCGCAGATGATAGCCTATTTTTCACAGAAAGAGGGAGCCAAGCAGCAAAAACttcaagaaattgaaaatagaagAGCTTTACGACGTCAAAAACTTGAAGAAGCCGAGAAAAAGAAGAAGGCTAGACAACAAGAATCAACATCTTCTTCATCCTCGTGCGCTTCTTATGCCGAATCTGACAAGTCACCAATGACAGGATATGATAGCGGTAGTACCGATTTTGGAGATCCGTATGACGGCGATACCAATTTAAAAGAAGGCGATTTCGCAATTGTTCAATTTGCTGGAGGAAAACGGGGTAAAACATCGTTCAAATATCTTTGCGTATTGCAACAAATTTGCGAAGATGGAATACGGGTTCAAGCGCTGAGCTACAAGAAGCGCATACCATTCTTTGCCCGGTTAAAGAAAATTTCAGCGAATCTTGGACCGTTCGCAACAAGTATCCTTCAACATCAGCTCCACAAAAGCATTAACAATAAAACACCGAAACCTGCAACGGCTGGGACGATTCTTCTGGAAGTTGCGCCGAAGCGCAGTCCTCTGTCCTATGAAAAGCTGTTCAGATCGGCCAAGAAACATAAATTACAGAACTCCAACTGGATACTACTCGTATCTGTATTTGATGTAGTTCTCTGCCGCGGTAGTACAACCTTATAA
- Protein Sequence
- MNASKYIRHTEKNVLDAIQEMEKGMSLRKASRKYNIPRSTLYRKVKGGCKIATSFGVPTRFTSEQEMLIVRWVLSMAEAGFPISRETFMYSVYKLAQEYGITFGEESHRPGRRWYELFMARHPEIVQRTSQNLTAQRRAVKQEDLNRWYKEVESYFAQNNLQTVFQDPSRIFNTDETAFFLNPKPGKVLAAKGCKSVYTAAGGDEKLNMTVLVTANAAGTLAPPMVVYRYTRIPPLIAAAMPLDWAIGKSENGNVGDWIGDVKDYSLFHMWMKAKQDVLEFRQPEAGLSPSTIQTLNDSTGQSPDCSGSLTPYPAHLQSPGPSTANAHIMQTPRPSTNSDPVTMQTSTTAVSIDPSIPTPFKRTLFWPGESSTAKKKIKKEKLPAVVTSPQMIAYFSQKEGAKQQKLQEIENRRALRRQKLEEAEKKKKARQQESTSSSSSCASYAESDKSPMTGYDSGSTDFGDPYDGDTNLKEGDFAIVQFAGGKRGKTSFKYLCVLQQICEDGIRVQALSYKKRIPFFARLKKISANLGPFATSILQHQLHKSINNKTPKPATAGTILLEVAPKRSPLSYEKLFRSAKKHKLQNSNWILLVSVFDVVLCRGSTTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -