Bcha022701.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- bab1
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:141315591-141326298[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-17 4.5e-14 53.1 0.0 1 43 131 174 131 176 0.95 2 2 0.96 7e+02 1.3 1.7 2 25 268 294 267 295 0.71
Sequence Information
- Coding Sequence
- aTGCAGtgcaataatttcaaaacagcTTTAACAGGCACGCTATATGACAACATCCTGGGCAAATCGAATCGGATGCAAGTCCTTGTCGAAGCTGGCCTGAGTCGCGAGCAAGAAGAACAGATTCTTGATTATTGTTGTGAAGTTAGTGCCACTTCGCGATATATTCGTCGAACGAAAAAACCGATTTCGATGATATTAGAGTTTGTTCGAAATTTAACGCAAGACGAAGACATTCAGTTTGAATTCACGGGGAAAAACGGATTTCGGTGGTGGTGGGCATTTTATAGTTACCAGTATCAACTGCAATCCATGTGGCAGAAATGTTGGAACACAAATCAGAATCTGATGCATCACTTGCGATTTCGAGAACGCGGTCCCCTGAAATCGTGGCGACCCGAAACAATGGCAGAAGCTATTTTCAGCGTTTTAAAGGAAGGACTGTCGCTTTCGCAAGCCGCCCGCAAGTATGACATTCCATATCCGACATTTGTTCTGTATGCGAATCGAGTTCACAACATGCTGGGACCGTCGATCGATGGTGGGACTGATCTGAGGCCAAAGGGAAGAGGACGACCGCAACGTATTTTACTAGGAATCTGGCCGGACGATCATATCAAAGGCGTTATAAAGACTGTAGTATTTAGAGATGCTAAGGACATAAAGGACGAAGGCATGCATCTGGCGTACGGCAGGCACTCGCCTGTTTTTCCATTTCAAGAAGGACAAATGAATTACGCTGGTGCACCTTGTGCGAATGGACTTCCCCAGCAGCCGGCTGTGTCGGCAGCCGACGCGATGTCGCCGGAAGCAACTGCTGCAGCTGTCGCTGCAGTAGCTCACGGTATCCGACAGCAAATGCAGATGGCGGCAGCAGCGCAACATCATCCGGACGCTTCATCAAATCTCTTCAATTTACCTCCACATATGCACGCAAACAACGGCGGAATACCTCTACCCAAGCAAAACTCACCCGCATCAAATTCTCAAAGACATGCATCACCATCAATACCGGGCCTTCCGAATCCGGCCGCTCTCGGTATAACCGGAATACCGGGCCTTCACATTATACCCGGCCTTGGCTCAAACGCTAGTCAGACATCAGCATCCGCAAACTCTATATATACTTCCAATTCGAGTAATCAGCAATCATCAACATTACACACCACATCAGCATCGAGCGGATCGATAAATATTTCGAGGAATAGCTCACCATCAGAGGCTGCCCACGATCTAAGAATGAACAGTCCGGACGAAAGTCCTTTAAATTCGCCTCTGGAAATGGCTCTGGAACCAGCTGTTAATCTCGCTGTCGGGGTTAGTGGTATGGCCTATAAACCGTCAAGGGGTTACTCGTCACCGCGTCCCGAACATTTATTTCAGGAGGATATTGCCGAACTGGTCGGCACAACATCACGTAACTGTCCATCGAACATGAATAATTTTAAGGAACCATCGACCGGTATCAAACTCGAGCCAGTTGCCGAATGTCGGTCGGAATAA
- Protein Sequence
- MQCNNFKTALTGTLYDNILGKSNRMQVLVEAGLSREQEEQILDYCCEVSATSRYIRRTKKPISMILEFVRNLTQDEDIQFEFTGKNGFRWWWAFYSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDDHIKGVIKTVVFRDAKDIKDEGMHLAYGRHSPVFPFQEGQMNYAGAPCANGLPQQPAVSAADAMSPEATAAAVAAVAHGIRQQMQMAAAAQHHPDASSNLFNLPPHMHANNGGIPLPKQNSPASNSQRHASPSIPGLPNPAALGITGIPGLHIIPGLGSNASQTSASANSIYTSNSSNQQSSTLHTTSASSGSINISRNSSPSEAAHDLRMNSPDESPLNSPLEMALEPAVNLAVGVSGMAYKPSRGYSSPRPEHLFQEDIAELVGTTSRNCPSNMNNFKEPSTGIKLEPVAECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -