Bcha021199.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:113880757-113882650[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-12 1.3e-09 38.8 0.1 3 43 149 189 147 190 0.92 2 3 0.3 2.2e+02 2.9 0.0 28 38 220 230 219 236 0.88 3 3 3.4e-15 2.5e-12 47.5 0.0 3 38 255 289 253 292 0.94
Sequence Information
- Coding Sequence
- ATGTCGGTCACCACTTGCATTACTCTAGCAGCAACACCGAGTTGGACTCGtgaatgtgaaacagatgtCTCACATTACACGTACATTAATGTCACTCGGGCTACACACGTTGCGAGCTATTTGATTTGGGAATCAGACGAACAGCAGAGCACAAAAGACTTTGAATATTTGGATGTCTACAATCCGGACGAAAAAATGCCACAGTATACAATTGAGCACACGAACAACGACTACATTCTAACGGAAAACACCGAATCAACATTTGTACTTCCCGTCGTAAAAAACGACAATGAAATTACACTGAAAGAACAATACACCGAAGAAATGCAAACCGATGCAGACGAACCGGAAATCGATCAAACGCCTCCAGAAACATTCAAAGAAGAATCCAAAGAGAAACCATTCAAACCGGAATCGGAATCTGTTCTGACGCCGTCACGAAAGGCAGCGTTCGATGCTGCAGTTCGTGATGTTCTTAATTTCGGTGTTAGCCTGCAGAAAGCGGCGACAACGTACAACATATCGAAAACTGTACTTTGGCGACGATTACGAAAAAATTCATCGTATAAAATCGAACGGGAACATCCAATGCTTAATTCGGCAATTGCAATGCTTGAAAAGGGCGATTCATTGAAGTCGATTAGTCAAACGATAAAAATTCCGATCTCAACGTTGCACCGACACAAAGTTCGTTTATTGCAAGAGGGCCGACTTCCCGATCACGTTCAAGTGAAACGACGCGATACAAAAGATAATTTAAAAGAACGTTTGTCGGACGCAATTAGCGCTTGTGCGCGCGGTATGTCGCAAAATCAAGCGGCCAATGTCTACTCGGTTCCGAAATCGACGCTATGGCGTCACCTGCAGAAACAGTCGCTTAACGTGAAAATCGCAACCGATATTGTTGACGAGATCTCCATATCAAGTTAA
- Protein Sequence
- MSVTTCITLAATPSWTRECETDVSHYTYINVTRATHVASYLIWESDEQQSTKDFEYLDVYNPDEKMPQYTIEHTNNDYILTENTESTFVLPVVKNDNEITLKEQYTEEMQTDADEPEIDQTPPETFKEESKEKPFKPESESVLTPSRKAAFDAAVRDVLNFGVSLQKAATTYNISKTVLWRRLRKNSSYKIEREHPMLNSAIAMLEKGDSLKSISQTIKIPISTLHRHKVRLLQEGRLPDHVQVKRRDTKDNLKERLSDAISACARGMSQNQAANVYSVPKSTLWRHLQKQSLNVKIATDIVDEISISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -