Bcha003522.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:54235641-54246437[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-10 1.3e-07 32.4 0.0 1 38 1167 1205 1167 1210 0.91 2 3 6.7e-13 4.9e-10 40.2 0.2 2 39 1222 1259 1221 1262 0.94 3 3 1.5e-10 1.1e-07 32.7 0.0 1 30 1276 1305 1276 1306 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGTTTTGTTTGCTCACAAACATTCGTTGAAAATAATCGCATTGACTGCGATGGTATTTGTGAACGTAGCTATCACATTGATTGTGCCAAGGCATTACACAATGTCTCTTCGCTGATTAACTTTACATGTACCGACTGCACTGCCATTAAGCCGTGTCACATTTTACGTCTTTTAAAAATTACGGCAACTCGCATTGATCAGTCCAACATGGCTTTTGAGGACATCAAGAACGACTATGCTTTTATTGCTAATAAGGTAAATAAAATATCAGATTCCTTAGTTACTTTTAACGATTACATCGATGGAATCCGGGATTATGAGACTCATTTCGATAAACTGCACGCTTGCTGCGGTATGATTCAGCATGATATCGCCAAATTGACAAAGAAATGTAATCAATCCGATGTAAAACTAAATACTCTCATAAGCAACATATCTGACACCGACTCATCTTCGAGCGTATCGTCGAATACGGATATATCTACACACTCGACAGGCGGCGCAATATGCCGTAAATTAGATATTATACACGGAGACATAAAATCTATTAAACTTACTGCACAGAGCACGGATGACTCTCTTCTGAGCATGTCAACTCACTTGATTAGCCGCGGAAGTGATTGTCTAGTTTCACAGGCTACAAGTGTCCAGTGCCAGACTTTGGAACTGCCTGCCGAAAATAATAGGACGGAAAAATCTTCTGTTAAGGGGAAGAAAAAGAAGTCAAAAAGAATGGATACTAATGAAAATAGTATGAACATTAATAACATACGGACTGGTTGCAGCATTGAGGAAATTCCTGAGCAACCTAATAGCTTATCCCCTTCGTCATCCTCAGCCCACGAAATTGTTATTTCCCAGAATATTTGCGATAATGAGGACATTATGCTGCACCATAGGACTGCCTCGCCAGGATCCGAGATGTTTATTCCTCAAGAGCCACGTTGCTCTCTTAAAGCCGTGGAAAAACCGAAGGTTCTTTTCGTATCGCGGCTTGATCCAGATACGTCTGAGGAGGAGGTGCGCAATAACATTAACGTAATTTTGCAATCTAGTAGGATTAATTTACCGCAAGGATCCATttcttgcaagaaaattgtacCAGCTGTGCACATTGGTAATCCGCGGGTGGCTTCGTTTAGAGTCGTTTTGCCTATATCTTGCTTCGAAACAGTTGTAAAATCAAACTGCTGGCCTCATTCAGCTATTGTTAGAGAATTCGTTCCGCATCGACGCAACGCGAATCACGTTACTCGGCCAAAAAACTTACTTCGATCTCACTGTACTACGGCAACAGACGCCGAGCTGTTTGATGGCGATTATCAGATCTTTCGCCGTGATCGTCATCTTGACATCCAGGACGCTCCGGTTGGCGGTGGAGTGCTTTGTGCAGTAAATCGGAAATTCACCGCTGAAGTAATTGATATTCCGGAAGCTAACACCACCGAATTGCTCTGCGTTGCGCTGACTTTAAGTGACAAAAAGCTGTACATAATCACGACATACATCCCTCCGTGTGCGTTACCTTTAGTCTATGAATCCGTTTTTAACGCTACGGATAGGATCTGCAATCTCATGCGTCCTTGCGATGAACTACTCATTCTCGgagattttaatttaccacTGGTAACGTGGTCTCGATCTGGAGATGAAGACTGCCTCATTCCGTCCTTCACCTCATGTCCTAGGCATGATGAACAATTTCTGGACTGCATGCTTTCAACAGGATTGCACCAGATCAACACGAAAGCTAATACCTCTGGACGATACTTGGACCTTGTTTTCTCTTCCGATGTAACGCAAACAACAGTCAATCGTTGTACCTCACCACTATTACCGGATTCGAACCATCATCCAGCACTTCACGTTCTTCTTAATTTTGATGCACGAGTTAATCACTTATTTCCTTCTGAAATAACATATggctacaattttaataaagtcgacTTTTCTGCTTTAAATCGCGACATCTCGACATGTGATTGGTTGGGTGTACTAAGTGAACCGGATGTTGAAACTGCCACTTTAGACTTTTATAACACGATCTTTCGTAGTTTCGCGCGATGCGTACCGGTCACATCGTCTAGACAGCCTAGACGTTTTCCATGGATCGATTCAGACTACGCTTCTTACTCAACCTTACGCGACCTGTTTATCAGCCGGTCTAGTGCGGCGTATACTTCGTAcgtcaataatattaaatcatcgaTTAAGGACAAACCTAAGCGGTTCTGGGATTTCGTCAATTCAAAAAGGAATTCGGACGGATACCCAGCTTCTATGTCTTTTGATGATGTGGGACTATTACGTACTGCtgaacaattaaaaattaagggCTTGTGCGAAACCACGGATCAATCGGAAGAGTCTGCATCCGAATCTACAACAATAACTGTTCCAGTATCTGAATCGATCCAGCATCCTGTTGTGAATGCCGGAAATTCTGTTAACATTTTAAGCCACGTTAATACCAACCCGCTTCGTAAAACGAGAATTCGAAGGCGCTCTAAGTCGCCAGAAACGAATTTGTCAATCAGTAGTGCAAACCAATCATTTACAACATCTTCGATAGTTGGGTTAAATTCATCGATATCATCAAATTTGTCAGCAATTGGTTCAACTCCTATTTCTACTTCTCTTGGTATTAAGTCTGAATCTCATCAACATCAtcagcagcaacagcaacaaatTTCCGCTACAAATACAATTGAAAGTGGGCAGGATAGCAATTCAACATCATCAAAACCTgcaaaaatcataaaaactgAAGACACATCAAATAATGGAACTAGCATACCACCTGGCGGAACTATTCTAGCACAAATTGTAGTTGAGCGAGATTGCAAAGATTCCAAAACTATGACCAGTCTAGGAATGGGAATGaacGGTGGTCTTCTAGGAGTGCCAATGGGCTTCCTTGATTTCGCACCGGAACCACCAGCTCCGTCGGCAACTCCCGTCACAGAACATGTTGACATGTCCTGTACACCTAGTACTGATACACGAGACTTATCAAATCCCAACGAAACGCTCGATATTGACAACCATATAGCACAACATATAATTCATCGATTAGATCATTCACCAATGCCTCAGATGCAACATCAGACTACTTCAGACGAGagcaattcaaatttaatacaaaatataaaaacggAAGTTGTTGAAAAAcaacatcatcatcaccatcagCAGCAAcatcaacagcagcagcaaatGCAAGGTCAATCGCAACAGCAGGCTCATCATCAGGATATGTCTGGAAGTACTGTAATGGAAATTGATCCGAACAATATAAAACACGAACCAGCTATGATAATCACTCCAGAAATCGTAACAATGATGACTTCGGGCCATATGGACATTTACAATTCAGATACTAGCGAAGATTCTCTTATGATAGCAAATGGTTCACCAAATGACAACAATGAGCCGCATTATACGAATCTCGATCAACaaaacgatttaaaattgaatatccCGAAAACGTGGACGCCGGAGGACATGAGTTCCGCATTAGATGCGTTAAAAAATCACAATATGAGCCTAACGAAGGCATCTGTAACGTATGGAATACCATCGACAACACTTTGGCAACGTGCTCATCGCATGGGCATCGATACGCCAAAAAAAGAGGGCACGACAAAGTCTTGGAATGAAGAAGCCCTAAATAGTGCGCTAGAAGCTTTACGCACGGGTCAAATATCCGCTAATAAAGCATCAAAGGCGTACGGAATTCCGTCCTCAACTTTGTATAAAATTGCCCGGCGCGAAGGAATCCGATTGGCTGCACCGTTCAATGCAGCACCGACCACATGGACGCCAGAAGACTTAGAGCGTGCATTAGAAGCTATACGAGCTGGCCATACATCCGTCCAAAAGGCTAGCACTGAATTTGGTATTCCTACAGGTAagtga
- Protein Sequence
- MSCFVCSQTFVENNRIDCDGICERSYHIDCAKALHNVSSLINFTCTDCTAIKPCHILRLLKITATRIDQSNMAFEDIKNDYAFIANKVNKISDSLVTFNDYIDGIRDYETHFDKLHACCGMIQHDIAKLTKKCNQSDVKLNTLISNISDTDSSSSVSSNTDISTHSTGGAICRKLDIIHGDIKSIKLTAQSTDDSLLSMSTHLISRGSDCLVSQATSVQCQTLELPAENNRTEKSSVKGKKKKSKRMDTNENSMNINNIRTGCSIEEIPEQPNSLSPSSSSAHEIVISQNICDNEDIMLHHRTASPGSEMFIPQEPRCSLKAVEKPKVLFVSRLDPDTSEEEVRNNINVILQSSRINLPQGSISCKKIVPAVHIGNPRVASFRVVLPISCFETVVKSNCWPHSAIVREFVPHRRNANHVTRPKNLLRSHCTTATDAELFDGDYQIFRRDRHLDIQDAPVGGGVLCAVNRKFTAEVIDIPEANTTELLCVALTLSDKKLYIITTYIPPCALPLVYESVFNATDRICNLMRPCDELLILGDFNLPLVTWSRSGDEDCLIPSFTSCPRHDEQFLDCMLSTGLHQINTKANTSGRYLDLVFSSDVTQTTVNRCTSPLLPDSNHHPALHVLLNFDARVNHLFPSEITYGYNFNKVDFSALNRDISTCDWLGVLSEPDVETATLDFYNTIFRSFARCVPVTSSRQPRRFPWIDSDYASYSTLRDLFISRSSAAYTSYVNNIKSSIKDKPKRFWDFVNSKRNSDGYPASMSFDDVGLLRTAEQLKIKGLCETTDQSEESASESTTITVPVSESIQHPVVNAGNSVNILSHVNTNPLRKTRIRRRSKSPETNLSISSANQSFTTSSIVGLNSSISSNLSAIGSTPISTSLGIKSESHQHHQQQQQQISATNTIESGQDSNSTSSKPAKIIKTEDTSNNGTSIPPGGTILAQIVVERDCKDSKTMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCTPSTDTRDLSNPNETLDIDNHIAQHIIHRLDHSPMPQMQHQTTSDESNSNLIQNIKTEVVEKQHHHHHQQQHQQQQQMQGQSQQQAHHQDMSGSTVMEIDPNNIKHEPAMIITPEIVTMMTSGHMDIYNSDTSEDSLMIANGSPNDNNEPHYTNLDQQNDLKLNIPKTWTPEDMSSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -