Btab008872.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:123356-131854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.63 28 5.0 0.6 1 20 103 122 103 124 0.93 2 11 0.33 15 5.9 1.3 1 13 142 154 142 157 0.92 3 11 0.0056 0.25 11.5 1.6 1 21 181 201 181 202 0.96 4 11 0.0053 0.24 11.6 0.3 1 23 323 346 323 346 0.94 5 11 0.041 1.8 8.8 4.3 1 23 440 462 440 462 0.97 6 11 0.18 7.8 6.8 0.1 3 20 477 494 476 494 0.96 7 11 0.00024 0.011 15.8 2.3 1 23 545 567 545 567 0.97 8 11 0.005 0.23 11.6 0.9 1 20 654 673 654 675 0.94 9 11 0.00014 0.0064 16.5 0.7 1 23 768 790 768 790 0.99 10 11 7.6 3.4e+02 1.6 0.2 5 18 800 813 796 813 0.86 11 11 3 1.3e+02 2.9 0.1 5 22 856 873 855 873 0.90
Sequence Information
- Coding Sequence
- ATGGCCACTGCCCTCGATTTCGTGGAAGTCAAATGCGAATTCCCAGAGGATGAAGAGAATCAGCAAGGAGACGATTCAATTGGAGGGAATCACGGAGAGGATGAAGCACTTAACCAAGGTGAGGTTGACCCTGCATACATTTCAGCAGGCTACCCTACGGATCCCTCGCTTTTTTGTGAGAGTCAGTTAGATTTTGGGAACCATTTTATCAACTCAGTTGATCCGCCACCTGGCCCATCAGGCACCAGcagcagtcttacaaaccttGATTTGACCCAGTATCTGCTTGAACAGCCAGAACAAACATTCACCTGTGTGTTTTGTGCTGATCAGTTTCGGCGAATGAGTGATCTCTCGAAGCATCTCTCTTATTGTCGTGCTGCCAAAGCTAATGCTGCAGGGAATGCAGCAGGTGATCATCCATATGTTTGTATGTATTGCggtctaaaatttaaaacaccgTGTGCTCGTGGGTTCCATATTAAAACTTGTGTACCATCAAAAGAGGGAGTTAGACTGACTTTCGAGGAGGATCCCTCTTTTTCTTGTCCACACTGCAAATTACAGTACAAGAAGGAAGGCAGTTATAACAAACACATCAAGCTTTGTCCTGTCAAGCtacaaaaagataaaataaggGCAGCTGCTGCTGAAGCACGCAAAGCAGCTGAAGCAGCCAAAGCTGAGGAGACTCGCAAAGCTGTCGAGGCACGTAAGGCTCTTCAAGCTCGCAAGGTCACACCAGCTCGCAAGGCTGCTGAGGCCCGTAAGCAAGCTCTTGCGGAAGCATCCAGCGAGAGGACTCGCCGAGCAAACTACCAGCTAAGACCCGCCAGGAAAAATCCTGCTGCCAAACAAACAAGAAGTCAAACCAGATTGAATTCTTTACAGGAAGCATCACTAACCAGTGGTTCAATAGACTCAAGAGAGAATAAGGCAATAAAGAAAGGAGGAGCGATTGTACGCTATGCCTGTTACCATTGTGATGAAGAGTTTGAGGAAAAAGCTGCATTGCGGGAGCACTTTATTAAAGCTCATCAATCAAGTAATTTCAACCCAGCAAACATAGAAAGAGTCGCCAGACGTGTTGCATCAGATGctcttcattttctttgcaTGTATTGCGGAAATAAGCATAAAGAGGAAAACGATCTCAATGAACACATTCTTGTTTGCCCTGCAAATTTTACCAATGCACTTGACAAAGAAGCCAAGGCTGAGGAAAATGGTTCACCAACAAACGATGAAGGAGATCAGGCCAGCTGTAGAAATGGTCTTCGTGGGGGTGCTCAAGTAGACGAATACTGGGAAAGTAATTATAATTGTCATAGGTGTTCGGCAGGATTTGACAAAAAATCTGAGCTccatgaacatttcaaaatacatCTTTGCAACCCAGGTAGAGTGAATTCAATGGATCGTTTTTGGTGTGTGAACTGTGGCGTTAATTTCAAAGGACCCCAGGACCTACTGAAGCACCTGCCATACTGTTCTGGAACAGAAAGACTAATCAAAGAGATCTCTTGCGGTGCAGAAGATGATAGCCCTGTCTCTGTTCAGAAATCTGAGGCCTgttcaaaaaaagaaaccttGGACAGCAAAGAATCACCAGGATTGTGCAAAgagaacacttttttttgtCACGAATGTGATCCCGAATTCACCAATGAATCTTTACTACGAGAGCATTTTAAAACTCACTCCGAGACCTGTTATTGCCCTCATTCTTGTATGTACTGTAGTATGAAAGTCCATAATCTTCATTCTTGCAATAATCATTCAACAGCACATGCAAACCCGTTTGTATGTAAAATTTGCTTTTCCTATTTTGTTTCATTGTTAGGGAAGCTCATTTTATCGCACATCAGTAGATTGGTTCCATGTGCTAACTGTTTGCCGAAGTTTGCAAATGAAACTGACAGGGACCAGCATGCTCAGCTGTTTACAGATAAATACGACTTTAAATgtgatttttgtcaaattatcTTCAAAGAACAGAGCCAATTGAGCACGCACTTCTCCAGTCTTGCAGAGAGGTTTTACGACTGCAAATCAAGTGCAGCAAAATTTAGTAGTCAGAGTCGTCTTGAAGGATTTTCTCAAGAACACACAGAATTGAAAGTATGTGGGTGTAACTTGCGTAATGCTAAATTTACCTCCGTCGATAATTTAGTGTTTCACTTCAAGTCGCATTCAGGACCATTCATTTGTGAGCTTTGCCAGGCCAAATTAGCCCCATTAACTGATTTCAGCATGCATTTACAAAcacaaaagaatgaaaaaaagatcaatgagaaaatttacgagTGTACAAGATGTAAAGAgaaatttagtgaaaaaataGCGTTACAAATTCATGAACGAACCCACACAAAACATCAACCCCTCTCTTGCATCTTTTGTCCTGTACTTTTCAACAGGAAAAGTAATTTAGAAAGGTATGTGAAGATTCATACTGGGGAAATACCTTCTGCCTGCAATCGTTACGGAGCCTGTTTCAGTCAGAAAAATAGCTCCTTAAACGAGGGAGGAACTCATACAGGAGAAAAACCGTATACCTACTCTAATTGCAGGCAAGAATTCAGTAGGCGCGGTTCATGGTTGACGCATGCAAAAACTCAACCTCTTGTTGCATAG
- Protein Sequence
- MATALDFVEVKCEFPEDEENQQGDDSIGGNHGEDEALNQGEVDPAYISAGYPTDPSLFCESQLDFGNHFINSVDPPPGPSGTSSSLTNLDLTQYLLEQPEQTFTCVFCADQFRRMSDLSKHLSYCRAAKANAAGNAAGDHPYVCMYCGLKFKTPCARGFHIKTCVPSKEGVRLTFEEDPSFSCPHCKLQYKKEGSYNKHIKLCPVKLQKDKIRAAAAEARKAAEAAKAEETRKAVEARKALQARKVTPARKAAEARKQALAEASSERTRRANYQLRPARKNPAAKQTRSQTRLNSLQEASLTSGSIDSRENKAIKKGGAIVRYACYHCDEEFEEKAALREHFIKAHQSSNFNPANIERVARRVASDALHFLCMYCGNKHKEENDLNEHILVCPANFTNALDKEAKAEENGSPTNDEGDQASCRNGLRGGAQVDEYWESNYNCHRCSAGFDKKSELHEHFKIHLCNPGRVNSMDRFWCVNCGVNFKGPQDLLKHLPYCSGTERLIKEISCGAEDDSPVSVQKSEACSKKETLDSKESPGLCKENTFFCHECDPEFTNESLLREHFKTHSETCYCPHSCMYCSMKVHNLHSCNNHSTAHANPFVCKICFSYFVSLLGKLILSHISRLVPCANCLPKFANETDRDQHAQLFTDKYDFKCDFCQIIFKEQSQLSTHFSSLAERFYDCKSSAAKFSSQSRLEGFSQEHTELKVCGCNLRNAKFTSVDNLVFHFKSHSGPFICELCQAKLAPLTDFSMHLQTQKNEKKINEKIYECTRCKEKFSEKIALQIHERTHTKHQPLSCIFCPVLFNRKSNLERYVKIHTGEIPSACNRYGACFSQKNSSLNEGGTHTGEKPYTYSNCRQEFSRRGSWLTHAKTQPLVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -