Btab005440.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:1425763-1443041[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.024 1.1 9.5 2.4 3 23 489 509 489 509 0.99 2 15 1.1 47 4.3 2.6 3 14 516 527 514 538 0.86 3 15 1.2 52 4.2 1.7 1 14 556 569 556 572 0.89 4 15 2.9 1.3e+02 2.9 0.0 3 21 586 604 585 605 0.93 5 15 0.0012 0.055 13.6 0.8 1 23 641 664 641 664 0.96 6 15 3.4e-05 0.0015 18.5 2.6 1 23 669 692 669 692 0.97 7 15 0.00031 0.014 15.4 2.8 2 23 698 719 697 719 0.97 8 15 0.002 0.092 12.9 0.7 2 23 725 746 724 746 0.96 9 15 0.00029 0.013 15.5 2.7 3 23 808 828 806 828 0.94 10 15 6.3e-05 0.0028 17.6 3.8 3 23 836 856 834 856 0.95 11 15 0.0022 0.099 12.8 1.8 1 23 862 885 862 885 0.97 12 15 0.046 2.1 8.6 2.1 1 20 891 910 891 912 0.93 13 15 0.46 21 5.5 0.2 2 23 929 950 929 950 0.91 14 15 0.042 1.9 8.7 0.2 3 23 958 978 957 978 0.97 15 15 2.7 1.2e+02 3.1 0.4 2 19 988 1005 987 1005 0.95
Sequence Information
- Coding Sequence
- ATGCATTCCTCCAACGAAACTTCATCGACTGGAGCTAGCCTTGAACAGAATCCAAATGAACCTATCCCAAGCATGAAGCTCCAAAATTCTTCGTCAGTTACTGACTTCAAATTGGGCTGCagcaaaaaaaacaatgaattttgcAACCAACCTGGTTCTAATTTTAAGAATAAATCGTTTCAAAGAATTACCTTGAAGTCATTGAATGGATTTCTTAAGGCAAAGTGTCGAGTTTGTGGCATCAATGCAACAAAATgtttgaagatatttaatgaaataaCAGAAATAGCAAATTTAGTGAACACTTATTTGCCCATTCAGGTTGGCGAATTTGACCCTTATCCAAAAACTATTTGCCTGGAGTGTCTTGGAATTTTGCAAACAACGAATGACTTGGCTTATCGAGCTTCTCAGGTTGACATTGCTTTCAGAAATAACTTTGAAAAGGTCACTGACTCAACAGCAACTGAAACGTTATCTGACAATAATTCCCAAACTAGGACTAGCTCAGGCAGCAGTTTTTGTGAATCAAAGTCCCAGGAGAAATTTCCCAGTGACTGCTCCAAAACTGCCTCAGCCGCTCAAGCGGATCAAATTCCTGAAATCCTGACCTCTGTAAATCTTGTCAGAgtgTCATCTGTCAAATCTGTTTCACAGGCTACTTCTAAAGCCAAACCAAGTCGTTTATATCTGACTAAAACTAATGTTGTCAACAACTTTGTAGCTGACTCAAACGAATTAAGGCAACTGCCTTTAAGCAAGCTCAataaacgtatgaaaaatgagCTATCAATGCCACCTCAAGAATCAGTGAGGTACACTAAATATGGTACTCCAATAAAATGCAGCAAGAAGTCTCTCAAGGCCTATAGCTCTGATGAGGAATCTAACAGAGTTTCAGATTTTGAACATTCTTATGCCAAACCAGCCAACCAAGAACCAGAATGGTTGAAAGGTCTAGAAGGGAATAACAATGATTTTGCAGGTCTgaattcagaagaaaattcagcTAGTGATTCCATTATCGATCCCACAAGTGTTGTAGAATGTATGTTGTCAACTCATACGCAGAACAGCGAGGATGATTCTAATGAGATAAATATTGTTCCTTCCAATATTTCGCACTCTGATACCGAAAAAAAACCTGCTGAGACACTACCAACTCTTCCACTCGGCAACGGCAAAATGTCACCTGTTGCACCAAAAGGCTTTGAAATCAGTTCCTTTAACCGACAAACAGTACTTGCACAGGTTTCTAAACTGTTGtcaaaagaatttttaaatGCGCCCTCTAAACCTATCTCGGGTACCATCCAAAGTCCAAATGAATCACCTGCCAAGAAGAGAAAGCGATTGATGTTTACGATTTCTCAAATTGATCCCAAGTCTCCAGTTAATGCGCCGCAGATGCCCCGATTATCACAGGAGTCCTTCCCAAAATACACCAAATTGGTCATTCATGGGTGCTACATATGTAACAAAAAGTTTGGGACTTTAGCACAACTTCTTTGTCACATGCAAACGCACGCAGCTGCTGACAAGTGTTGTCCTGTTTGTGAAAGAGTGTTCAGTCGAGCCTCTATCCAGCCATTACTCCACCATCGCAAAGTACACAGTGAAGCAGAACTTAAAAAGTGGACCACTGGTTCAGACGAGGAAGGGAAATTCAAGTGTGAAAGGtgtagcaaattttttatcagcaGAGTTCATAAGACATTCCATGATGTCTACCACCACGATCTGAAGATAGTGGCATGTGGATATTGTGACGGTGAGTACATTACTGAAGAGACCGTGATAAAACATCGCAAGGTATGCAGTGCAAATGGAGAGTCTTTCAAGAGATCTTGCCCACTTTGCTTTCGTGAGCACCAGAGCCTGGAGGCCTACCAAGAGCACATCCAAAACCATGCAAAAGACCACACCTGTGACCtttgtttttcctcatttatttCAAAGGGCTCTCTTCAAGAGCACATTCAAATTGATCATGCAGATAAGCCGTACACGTGTGACACTTGTGGCAAATCGTTTGTCTCAGAGAACTGTCTGCAGCAACATCAAGAATCTTTTCACAGGAAACTCAAACAATCTTGTCATCTTTGTTCTGCTACATTTTCCTCCCTTAAACAATTGACTGCTCATACGAAGACACACATCGATGCACCTCTCAAATGTACGTTTtgttcagaaatttttcaaacatcgGCAGAGCTGAAGACACATAGGGCCTCTCACAGCGAGTTGGTTTGTTACCTGTGTAATGCTGTTTGcattaatgaagaaaaatgtgtCGAGCACGTTGCACGTTGTAGAAAGCAACGAGAAGAACGTTTAAAAGATGCAAATCCAGAGAAAAACTGTGACGGGGAGGTAATTAAGATCCAGAAACAGAGGAAGCATAAGCATCTAAATTTAGCCTGCAATTTTTGTcataaaaaattctctgatagCACATCTCTGCGCAACCATGAAACCATCCACTCTGGAGAACGGCCCCACCTGTGTTCACAATGCGGTAAGACTTTTCGCACCTCAAAACTTCTACTCAGACATTCAAGACTGCACTCAGACATTAATTGCTATGCTTGCCAGTATTGCTCTGAATCTTTTCAGACCATGGATAAATTATACATACACAAACGCACAAAGCATACTAATAAATATAGCTTTAAATGTGATATGTGTAATCACACTTACTCTTTAAGGAAGCACTTCATCATCCATTCGCAGATATGCAAATATTTTGAACCATCTTCGAATATGTCATCAGAAAAAACAAGAAGGTGCATGTTGTGTCCAAAGGTATTTACTGCACTAACGATCATGCGACATGAAAGGATTGCACATGATCCCAAATATCCAGCCATATGCAATATCTGTGATGAGCAGTTGACAAGTGTCCTTTTGCTGAGGAAACACTTAGAAAGGCACTACAATAACAATGAGATTAAAAACATCAGATGTccaaactgtctgaaaatttgcgCAGACGAtgcagatttcaaaaatcacgattgcGACTCAAACGGAGGTAATGACACAAGGGAGGGCTTAGTTGAGTCGCAGGCTCAGCAAGCTGTGGAAAGTATCCTCCCACCTCTGTCACCTCTATCTCAAGAGCTTCGCTCCTTTCAGTCGGAAAATCTCTCTGAAGCTGAGCTTATTGAAAGTGCAATCAGCCAAACATCACCATGTGAAGCTCAGTCTTGA
- Protein Sequence
- MHSSNETSSTGASLEQNPNEPIPSMKLQNSSSVTDFKLGCSKKNNEFCNQPGSNFKNKSFQRITLKSLNGFLKAKCRVCGINATKCLKIFNEITEIANLVNTYLPIQVGEFDPYPKTICLECLGILQTTNDLAYRASQVDIAFRNNFEKVTDSTATETLSDNNSQTRTSSGSSFCESKSQEKFPSDCSKTASAAQADQIPEILTSVNLVRVSSVKSVSQATSKAKPSRLYLTKTNVVNNFVADSNELRQLPLSKLNKRMKNELSMPPQESVRYTKYGTPIKCSKKSLKAYSSDEESNRVSDFEHSYAKPANQEPEWLKGLEGNNNDFAGLNSEENSASDSIIDPTSVVECMLSTHTQNSEDDSNEINIVPSNISHSDTEKKPAETLPTLPLGNGKMSPVAPKGFEISSFNRQTVLAQVSKLLSKEFLNAPSKPISGTIQSPNESPAKKRKRLMFTISQIDPKSPVNAPQMPRLSQESFPKYTKLVIHGCYICNKKFGTLAQLLCHMQTHAAADKCCPVCERVFSRASIQPLLHHRKVHSEAELKKWTTGSDEEGKFKCERCSKFFISRVHKTFHDVYHHDLKIVACGYCDGEYITEETVIKHRKVCSANGESFKRSCPLCFREHQSLEAYQEHIQNHAKDHTCDLCFSSFISKGSLQEHIQIDHADKPYTCDTCGKSFVSENCLQQHQESFHRKLKQSCHLCSATFSSLKQLTAHTKTHIDAPLKCTFCSEIFQTSAELKTHRASHSELVCYLCNAVCINEEKCVEHVARCRKQREERLKDANPEKNCDGEVIKIQKQRKHKHLNLACNFCHKKFSDSTSLRNHETIHSGERPHLCSQCGKTFRTSKLLLRHSRLHSDINCYACQYCSESFQTMDKLYIHKRTKHTNKYSFKCDMCNHTYSLRKHFIIHSQICKYFEPSSNMSSEKTRRCMLCPKVFTALTIMRHERIAHDPKYPAICNICDEQLTSVLLLRKHLERHYNNNEIKNIRCPNCLKICADDADFKNHDCDSNGGNDTREGLVESQAQQAVESILPPLSPLSQELRSFQSENLSEAELIESAISQTSPCEAQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -