Basic Information

Insect: Bemisia tabaci
Gene Symbol: lola
Assembly: GCA_903994105.1
Location: NW:817694-830821[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00035 0.016 15.3 0.5 1 21 49 70 49 71 0.95

2 8 0.0064 0.29 11.3 1.7 1 23 79 102 79 102 0.96

3 8 9e-06 0.00041 20.3 1.6 2 21 128 147 127 148 0.95

4 8 0.028 1.3 9.3 1.9 3 23 158 178 156 178 0.98

5 8 0.0014 0.062 13.4 1.5 1 20 214 233 214 235 0.96

6 8 0.0004 0.018 15.1 1.2 1 23 243 265 243 265 0.99

7 8 0.0019 0.087 12.9 6.1 1 22 289 310 289 310 0.95

8 8 1.7e-05 0.00075 19.4 2.0 1 21 328 348 328 349 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00035	0.016	15.3	0.5	1	21	49	70	49	71	0.95
2	8	0.0064	0.29	11.3	1.7	1	23	79	102	79	102	0.96
3	8	9e-06	0.00041	20.3	1.6	2	21	128	147	127	148	0.95
4	8	0.028	1.3	9.3	1.9	3	23	158	178	156	178	0.98
5	8	0.0014	0.062	13.4	1.5	1	20	214	233	214	235	0.96
6	8	0.0004	0.018	15.1	1.2	1	23	243	265	243	265	0.99
7	8	0.0019	0.087	12.9	6.1	1	22	289	310	289	310	0.95
8	8	1.7e-05	0.00075	19.4	2.0	1	21	328	348	328	349	0.96

Sequence Information

Coding Sequence: ATGATCGAAGAACTAATAGACCTAAGTGACTCTGACTTACCTGTCGATTTGCAGCCTTTGCCGACGAACAGACCTACTCTCACAGCTTTTACTACCCCCGGTGCACCCCAGCAGCACAAGCTAGTAGGGATACTGCCCCCTGTATTCCCTTGTCCAAATAAATGTGGGAAGTCTTACAAATGGAAAGATAGCCTGACGAGACACGTGAAATTTGAATGCGGCAAGGAACCGCAATTCCCATGCCACATGTGCTCGTACAAGGCCAAACAAAGAGTCAGCCTCAGGTATCATTTAATCAAAGCTCACGATGAGTCGGCTCACGGGGAGTTTCGGCACTTTTTCGATTCTCGGTCCCAGGCGGAGGCGCCGAGCTCCGAGTTGCAGTGTCCCAAGTGTGGGCGCCACTACAAGCGGAAGGACAGCCTGAGCAAGCACGTGCGCTTCGAGTGCGGAGTCGAGCCGCGCTTCTGGTGCGAGTTCTGCCCCTACAAAGCCAAACAAAAAATCACCCTCAAGCATCACCTCGAGAGACACCTCAGGGACCAGGCCAAGCTCAGCGATCCCAACAACGTGGAGCACATGCTCCGTTACTACCTGGCCAATGGAAGAGACCGGAGCAATCTTATGAACCACAAGCCGTACACCTGCCTCAGGTGTAATAGGAGTTACAAGCACAAAGGTAGCATTAAAAGGCATCTGGATCTGGAGTGCGGTGTCGAACCTAAATTCAAATGCCCCTTCTGTCCGTACAAGGCGAAGCAAAAGGTCGGATTGCAGTATCATCTGAAGAAACACGAGAGAGATGTTCAAGAAGTGAGTGTAGTAACCGACGGTGACAACTGCATTCCCGTCAACATTGTGCCTTTCTTCTGCAACTCGTGCCATAGAACCTACAAGTACAAGCGAAATTATACCCGACACTTGCGCAAAGAGTGTAAGGGGGACGCTCGCAAGAGGAGACGAGGAGCAGCCGAGCAAAACTTCAGATGCGAGAAGTGCGGTCGCGGGTACAAGTACAAACGGAACTACAGGCGCCATCTGCGGGAGGAATGCACCAACCGTCGGCAACCTAGTCCAGGACCGATAATAGTCATCGTCCCGGCCGCCGAGCCCGAACGGACGTCCTCTGAAACCAACGAataa
Protein Sequence: MIEELIDLSDSDLPVDLQPLPTNRPTLTAFTTPGAPQQHKLVGILPPVFPCPNKCGKSYKWKDSLTRHVKFECGKEPQFPCHMCSYKAKQRVSLRYHLIKAHDESAHGEFRHFFDSRSQAEAPSSELQCPKCGRHYKRKDSLSKHVRFECGVEPRFWCEFCPYKAKQKITLKHHLERHLRDQAKLSDPNNVEHMLRYYLANGRDRSNLMNHKPYTCLRCNRSYKHKGSIKRHLDLECGVEPKFKCPFCPYKAKQKVGLQYHLKKHERDVQEVSVVTDGDNCIPVNIVPFFCNSCHRTYKYKRNYTRHLRKECKGDARKRRRGAAEQNFRCEKCGRGYKYKRNYRRHLREECTNRRQPSPGPIIVIVPAAEPERTSSETNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -