Btab005665.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:2881923-2890940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0053 0.24 11.6 3.8 1 23 375 399 375 399 0.98 2 9 0.00047 0.021 14.9 5.5 1 23 405 427 405 427 0.97 3 9 0.00028 0.012 15.6 0.1 2 23 434 457 433 457 0.96 4 9 9e-05 0.0041 17.1 0.8 1 23 464 488 464 488 0.97 5 9 0.0018 0.082 13.0 2.9 2 23 496 517 495 517 0.97 6 9 3.6e-05 0.0016 18.4 3.6 1 23 523 547 523 547 0.98 7 9 0.00011 0.0048 16.9 0.5 1 23 553 577 553 577 0.97 8 9 0.018 0.79 9.9 2.0 1 23 583 608 583 609 0.97 9 9 0.0072 0.32 11.2 2.9 2 23 629 653 627 653 0.87
Sequence Information
- Coding Sequence
- ATGGAGTCGGGGGCACTGAAAGAAACGGTCGTCAATGTACCTGTCAGCTCTTGTCCTGTAGAACTTTATGGCAGTTCAGACCCAAAGGACTTTGAAAGCTTCGTTTTCTTGGATAAAAATGAACAGCTGCGTAATCTCTTCAGCACCACTGACTACGAAATCGAAGTGTCTGAAATGCAACTTGCGGATTCACTAAATCATGTTGAAATGTCCGATTGCTCACTGCACTCTGACGAAGATTATTATCTAAATGTTGAATGCTCATCGTTACCTTCCGAGATGACTCTAGTAAGTAGGACTACTGATGTAACAACCGGTAAACTTGGAGCTAGTATCAGCCCATCTAAAATCGTACCATTTTCATCACTTTCAACTGAACCAACTTTGCCGCTCAATTCTTACAGGTTCAATGATGTCATTATTTCTGACCACTCCGGTACTCTGGTTGATGACAATGATACCTTCATCTCGTTTGAGGCGGCTTCTGTGAATTCTTCATCTGAAGCAGAGAAATCTGATACAACTGTGACTAAGTCATCTGCAAGAACAGTGGCTGTCATTCCACAAAAAAACGGAACAATCAAAAGAAAACCAAGTAACTCCGCAGCAGTCGCTAAGACTAAAAGTGCAAGAAAAATCCCAAAGCTGACACCCATGAACAGTTTGATAAAGAAAGAATTCGTTACGGAAGGGGATACGACGGTTATAGTGGATCATGACAATACCAAAGAATCGAAAGTTTTTAATAACATGAAAATTTCGGGTGGTAACAATGTTTTTAAACTTCAACAAGTCAAAGATGGATCAAATGAGAAAGGAGACTTGGTTCAGCTGAAAATCCAAGATTCAACAGTGAAGGAAGGATCCAATGCTGAaaatacatctgaaacttttaaATGGGTCCTAATGCGAGCTACTCCTCCCTCTGATCCTGCAGAAGAGAAACCGGTGAATGAAGCATTTGAGAAAATGGGTATATCGGAGGAAGAGCTGAACAAATTACAGATGGATGTAGGTAACCAGAAAGTCTGGTTCTGTCCACAAAATGGTTGCATGTATAATGCATCCAGAATGAACTGGCTTAAGGCTCACCTTCTTCAAACACACTACGATGTTCGACCGTacaagTGTGATCATGAGAATTGCAGCTGGTCATTTTTTTCGCTAGTCAAGCTTAAAAGGCACAAACAAACACATCTGAAGAAAAAGAGTCACAAGtgtcagCTTTGTGAACGATCCTTTTCAACGGTTTATAACTTACACACTCATTTAAAATTGCACAAAAGGCCTGCTGATATTACATGCCCGGTTGAGGAGTGCAATGCAGCATTTCAAACAAAACGGAACTTGGAGCTTCACCTACGGGTCCACAAAGAAATCCCAGCTCCATACCGCTGTGAGCGCAAAGACTGTGGCAAGAGCTATTACTCTCGCAATGCCTTACGCTCACATGCCCGTGGACATGTTTACTCAGAGGAAGACCTCAAGTGCAGTTTCTGtaacaaaatttttgataagCCATGTCGGTTGAAGGCCCATGTTCGCTCACACACCGGTGTCAAACCTTACAGATGTAAATTCGAAGGGTGTTCGTGGGCATTCACAACATCAAGTAAGCTCTCGCGGCACATGTGCAAACATACAAACATTCGCAAGTATCCGTGCACAATAGAGAAGTGTggtaaatcatttttaaggcCAGAGCATTTGCGGGATCACGTTCTAACgcattttaccgaaaaaactTTCACATGTCCTGTTGATACCTGTGATGGTGCATTCTCAGCACGATCCAGCCTCTatgttcatttgaaaaaatgtcacCACAACACCAAAGATGCAGAAGGCAGACGGATAGGAGTTGGAGATGGCCCCAACTGTCATTCGTGTGTTATTAAAGGTTGTGATTATCAGTTCTCATCAAAGGAAGATTTGAAGTCGCATCTAATTTATAAGCATGTTCATTCCTTGGATATTAGCGGAGCATCTGCTTCTAAAGCTCCACAGCCCATTGCAAAGAGTGATAGTGTTCATATTGAATCAATTGACCCCCTAGACACCATAAATCTTctagaaaatgatgaaaatctaGGTTCATTGAACGTACTAACTTGCTCTAATGATGAGTCATCAATATCAGGAATTAACCTAAACTTGGGGCCTGAAGGTTTGTCTGTAAGTTTACCGGAGTTGGTCTCAAACAATTCGGACTTTAACTCGATATCTCCATCTTTTGAGCAGTCTTTAACTACAGAGAAAATGAATTTGACAGAAGATGAAACAGAACTGTCGGAAGGAACACTGCAAGAAATCGTGCCTGCAAGCTCTAAGGTGCTATCAAAAGagACAACTGCTGCAGAAAAAAGTGGTATAGGTTGTGCGAGAACAAACATCACTCTAAAAGACGTTCGAAATAAGATGAATAAAAAGAAGACAACCTCAAATGGGAGGCTCAAGAAGCAAATTGCTGATGCAACAGAAAACCTGAGAAAGAGTACTGAGGTCTTTTCGAAGGCATTAGCAATTTCGCAGACGGAGTCGGTGATTCCACCTTGTTTGCAAAGTTCAGATGTTGTCTTGCCCTCTAGTTGGTTAGATGATAACCTATCTCCATTGATGCTCCAGGACGATTTGAATGAAAATCCAGAGCTCTATGAAACAACTCAGGATGACACCGTACTATTAGGGGCCTCGTCCAATGAACTGCAAGTGTTCCTCTTTGACTCAAGTACCTCCTCCAGGCATTGCGACTTTGAACAATCTACAATTAATTTGCGTGATCTGGAATAG
- Protein Sequence
- MESGALKETVVNVPVSSCPVELYGSSDPKDFESFVFLDKNEQLRNLFSTTDYEIEVSEMQLADSLNHVEMSDCSLHSDEDYYLNVECSSLPSEMTLVSRTTDVTTGKLGASISPSKIVPFSSLSTEPTLPLNSYRFNDVIISDHSGTLVDDNDTFISFEAASVNSSSEAEKSDTTVTKSSARTVAVIPQKNGTIKRKPSNSAAVAKTKSARKIPKLTPMNSLIKKEFVTEGDTTVIVDHDNTKESKVFNNMKISGGNNVFKLQQVKDGSNEKGDLVQLKIQDSTVKEGSNAENTSETFKWVLMRATPPSDPAEEKPVNEAFEKMGISEEELNKLQMDVGNQKVWFCPQNGCMYNASRMNWLKAHLLQTHYDVRPYKCDHENCSWSFFSLVKLKRHKQTHLKKKSHKCQLCERSFSTVYNLHTHLKLHKRPADITCPVEECNAAFQTKRNLELHLRVHKEIPAPYRCERKDCGKSYYSRNALRSHARGHVYSEEDLKCSFCNKIFDKPCRLKAHVRSHTGVKPYRCKFEGCSWAFTTSSKLSRHMCKHTNIRKYPCTIEKCGKSFLRPEHLRDHVLTHFTEKTFTCPVDTCDGAFSARSSLYVHLKKCHHNTKDAEGRRIGVGDGPNCHSCVIKGCDYQFSSKEDLKSHLIYKHVHSLDISGASASKAPQPIAKSDSVHIESIDPLDTINLLENDENLGSLNVLTCSNDESSISGINLNLGPEGLSVSLPELVSNNSDFNSISPSFEQSLTTEKMNLTEDETELSEGTLQEIVPASSKVLSKETTAAEKSGIGCARTNITLKDVRNKMNKKKTTSNGRLKKQIADATENLRKSTEVFSKALAISQTESVIPPCLQSSDVVLPSSWLDDNLSPLMLQDDLNENPELYETTQDDTVLLGASSNELQVFLFDSSTSSRHCDFEQSTINLRDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -