Btab002153.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:3876810-3900079[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 1e+02 3.3 0.2 2 18 444 460 443 460 0.92 2 14 0.00017 0.0077 16.3 1.3 2 20 473 491 472 493 0.94 3 14 0.0058 0.26 11.4 1.0 1 23 501 524 501 524 0.95 4 14 0.0048 0.21 11.7 0.9 1 23 530 553 530 553 0.95 5 14 0.013 0.56 10.4 1.7 1 23 559 582 559 582 0.95 6 14 0.0011 0.048 13.8 1.1 1 23 588 611 588 611 0.95 7 14 0.037 1.6 8.9 0.8 1 23 617 640 617 640 0.95 8 14 0.0065 0.29 11.3 1.3 1 23 646 669 646 669 0.94 9 14 0.013 0.56 10.4 1.4 1 23 675 698 675 698 0.96 10 14 0.00059 0.026 14.6 1.2 2 23 705 727 704 727 0.94 11 14 0.01 0.45 10.7 4.9 1 23 733 756 733 756 0.95 12 14 0.00036 0.016 15.3 1.5 1 23 762 785 762 785 0.96 13 14 0.00095 0.043 13.9 0.7 2 23 792 814 791 814 0.94 14 14 0.051 2.3 8.5 2.0 1 23 820 843 820 843 0.95
Sequence Information
- Coding Sequence
- ATGGACAAGTATCCAGGTGGATGGATACCGGGCGTACAACTTAAAAATGAGTTTGTCTCAGAAGACTCTCTGAAAGATAAAGATGAATACAGGGCAGATCTGGGTCAAGACGCCCTCATTCACAACGGATCCGAACTTAATCAGCATCAGCCAATAACGCATCTGGAAAATGAAGATGTCAAATTATTCGCCAGGAGTTGGTGCAACATCGATGATCCATTGGTGCAAAAGCCATTAGTGCTTCTGGAGAGACTTGATGCCAAGCTCATGGACAGCCTAACGAGCCCTTCACCCGCTGAGCGCAAACACGTAACTTTGTCTTtattaaaaaagataaaagtagAAGAGGCAGAGGACGATATAAATCCACTTAGAGAACATTCTAGTAAGATCGCTGTCCTCCAGTTGGTTCCaaaaagggaaattgacatcgAATTTCCCACCACGGCCATGATAAAGGAGCAACCTGATTCAAAACCCGAAGTCAAGTTACACCATGAGCTTATTTTCGACAGCACTGGAGAATACCTTGACAATGGTCATCAAGAAATTAGCACCCAGAGCTCAAACAGTTTGAAAGATCCGATTGTTGTCCTCGGGAAACTTGATCCACAGTTGGTTAGCAGCCATTTGAAAGCGATAGAAAATTCTCCCAGTCCGAGCCATTCAGTTCCACCGTTAGAGTTGAGAATAGAGGAGACTTTAGATTTGGATCATCTTTCTATTCACGATCAAAACATAGAAAATCAAAGAACAAGCGATATGTCAATGAACGATCCAAAATCCTCGCTAGCGGAACGCCGGAAATCGTCCAATGGGAGGGTCATAAGGAATTTCGCTCCGACCAAGAATGAAAGACTGCCTCGTCACTTTCATTTGGATGAATCTGCTCCTGAAAGCTCttccagttttttcaaaaattcggcaCTGACTCGTCATCAACCGAATGAGGATTTATGGACGAAAATGTCCAAGTCAggaatccaagttgagcctgtCGATTGCACTGATGAAACTTTAACTCATATCGATTATTCAAAAAACTCCGTGCAGCCTCATGCCGAAAATGTAATTTGCTCGTTGGTTGAATGTGCCGCAAAATTTGAATCAAAAACGAGTCTCGGCTTACCAGATCATACTAATGATCAATCATTCTTATGCGGTCCGAGCTCAAGCACGATCAAATCGAAGGTACATCTACACAGGCAAAGAAtgcatgtccaaaattttgatcgCACATTTAAGCGTGATGCATGTTCTCGCAGCTTTCTACCGATGGAAGGTTTGAAAACGGACAATCGAAGAATTCCCCGAGTTCAACAACAGTCTTCCTGTGCCCAGTGTTCAACAATCTATAAATCAAAAGGATCGTTAGAAAGGCAATTTTGGAATATTCACTTTGATGTCCAGAAGCTTCAGTGTAGTcagtgttcaaaaaaatttaaaaaaagtcaaagttTACGAGCGCACATGACAAATATCGTCAGGAAAAGTCAACCCTTTCCTTGCGGTCAGTGCTTAAgcaaattcaaattgaaaagcACTTTGAAGAATCATATGTTGCAAGTGCACAGTGAGCACTGTCCTTTCTCGTGTGCTCAGTGCACAAGcaaattcaaattgaaagaCGATTTAAAGCAGCATATATTGCAAGTGCACAGTGAGCATCGTTCTTTCTCGTGTGCTCAGTGCTCAAGCAAATTCAAATGGAAAAGCACTTTGAAGCGACATATGTTGCAAGTGCACAGTGAGCATCGTCCTTTCTCGTGTGCTCAGTGCTCAagcaaattcaaattaaaaagcgATTTAAGGAGGCATATATTACAAGTGCACATCGAGTACCGTCCTTTCTCGTGTGCTCAGTGCTCAGGCAAATTCAAATGGAAAGGCACTTTGAAGCGACATATGTTGCAAGTGCACAGTGAGCATCGTCCTTTCTCGTGTGCTCAGTGCTCAAGCAAATTCAAATTGAAAGGCGCTTTAAAGAGGCATATGTTTCAGGTGCACAGTGAGCACTGTCCTTTCTCGTGTGATCAGTGCTCAAGCAAATTCAAATGGAAAGGCACTTTGAAGCGACATATGTTGCAAGTGCACAGTGAGCATCGTCCTCTCACGTGTGCTCAGTGCTCAAGCAAATTCAAATCGAAAGGCACTTTGAAGCGACATATGTTGCAAGTGCACAGTGAGCATCGTCCTTTCTCGTGTGCTCAGTGCTCAAGCAAATTCAAATTGAAAGGCCATTTAAAGAGGCATATGTTGCATGTGCACAGTGAGTACTGTCCTTTCTCGTGTGATCAGTGCTCAAGcaaattcaaattgaaagaCGATTTAAAGCGACATATGTTGCAAGTGCACAGTGAGCATCGTCCTCTCACGTGTGCTCAGTGCTCaagaaaatacaaattgaaAGACGATTTAAAGAGGCATATATTACAAGTGCACATCGAGTACCGTCCTTTCTCGTGTGCTCAGTGCTCAagcaaattcaaattaaaaaggtATTTGAAGCAACATTTGTTGCAAGTGCACGGTGAGCATCGTACCTTCTCGTGTGCTAAGTGA
- Protein Sequence
- MDKYPGGWIPGVQLKNEFVSEDSLKDKDEYRADLGQDALIHNGSELNQHQPITHLENEDVKLFARSWCNIDDPLVQKPLVLLERLDAKLMDSLTSPSPAERKHVTLSLLKKIKVEEAEDDINPLREHSSKIAVLQLVPKREIDIEFPTTAMIKEQPDSKPEVKLHHELIFDSTGEYLDNGHQEISTQSSNSLKDPIVVLGKLDPQLVSSHLKAIENSPSPSHSVPPLELRIEETLDLDHLSIHDQNIENQRTSDMSMNDPKSSLAERRKSSNGRVIRNFAPTKNERLPRHFHLDESAPESSSSFFKNSALTRHQPNEDLWTKMSKSGIQVEPVDCTDETLTHIDYSKNSVQPHAENVICSLVECAAKFESKTSLGLPDHTNDQSFLCGPSSSTIKSKVHLHRQRMHVQNFDRTFKRDACSRSFLPMEGLKTDNRRIPRVQQQSSCAQCSTIYKSKGSLERQFWNIHFDVQKLQCSQCSKKFKKSQSLRAHMTNIVRKSQPFPCGQCLSKFKLKSTLKNHMLQVHSEHCPFSCAQCTSKFKLKDDLKQHILQVHSEHRSFSCAQCSSKFKWKSTLKRHMLQVHSEHRPFSCAQCSSKFKLKSDLRRHILQVHIEYRPFSCAQCSGKFKWKGTLKRHMLQVHSEHRPFSCAQCSSKFKLKGALKRHMFQVHSEHCPFSCDQCSSKFKWKGTLKRHMLQVHSEHRPLTCAQCSSKFKSKGTLKRHMLQVHSEHRPFSCAQCSSKFKLKGHLKRHMLHVHSEYCPFSCDQCSSKFKLKDDLKRHMLQVHSEHRPLTCAQCSRKYKLKDDLKRHILQVHIEYRPFSCAQCSSKFKLKRYLKQHLLQVHGEHRTFSCAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -