Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:1202031-1219272[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.7 1.2e+02 3.0 0.1 2 13 294 305 293 310 0.74

2 7 2.4e-05 0.0011 18.9 2.5 1 23 352 374 352 374 0.98

3 7 4.7e-06 0.00021 21.2 2.1 3 23 457 477 456 477 0.97

4 7 2.3e-06 0.0001 22.2 1.4 1 23 483 505 483 505 0.97

5 7 4.8e-07 2.2e-05 24.3 2.8 1 23 511 533 511 533 0.96

6 7 0.0017 0.077 13.1 3.7 1 21 539 559 539 561 0.94

7 7 4.4e-06 0.0002 21.3 2.1 2 23 575 596 574 596 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.7	1.2e+02	3.0	0.1	2	13	294	305	293	310	0.74
2	7	2.4e-05	0.0011	18.9	2.5	1	23	352	374	352	374	0.98
3	7	4.7e-06	0.00021	21.2	2.1	3	23	457	477	456	477	0.97
4	7	2.3e-06	0.0001	22.2	1.4	1	23	483	505	483	505	0.97
5	7	4.8e-07	2.2e-05	24.3	2.8	1	23	511	533	511	533	0.96
6	7	0.0017	0.077	13.1	3.7	1	21	539	559	539	561	0.94
7	7	4.4e-06	0.0002	21.3	2.1	2	23	575	596	574	596	0.96

Sequence Information

Coding Sequence: atGGCAGGCTACCGCCGCGTTAGTTATTATGATCTCTGTCGGCTGTGCACCGCGAGCGATGGGACGAAAATGCACATTTTCCGTGAGGAAGGACGTAGGAGACAAATCCCCACCAAGATACAGCTGTGCCTCCCTCTCCAGatcaaTGAAGACGACTCATTACCTAAAAGCATTTGCAACAACTGTGCGGATAAATTGGAATCTTTCTACAATTTTCGGGAATCTTGTCTCACAGCTGAAGCAATGCTAGAAGGGTTTCAAGATTTTAAACGGGAAGGAATGGTTTATGTCAAAGACGAGACTCTAGTCAAGGCAGAGACCTCTCAACTCCCAAAAGAGGAGGACTCTCCGAATAATGTCCAGGTTGTGGAGACTAGTTGTATGGTTCCGGTTTCTGTGGAAGGACTTCAGAATCTTGTGCAAGCAGGTGCTGTCCACATCATCAATGACCCAGCCTCTGACAAAGGATTGCAGTATAAAATTCCAATTCCACTACAGtTACAATGCGGCACAACGGTGATTGACTCATCACAACAGATACGATACAACATAGCAGAAGTCAGTCCTCAGACGGCCAAAAGTGTGCAGGAAGCATCTCAACTTCTGCAAACTGCAAACCACAAAGAATCACAAAACTTCTCAGAAAAAGCATCACACAATTCGGGAACTCAAACAGACAGTAACCGGGAGGTAGTCATTAGTCAAGCAGCGCTAAACAATGATATGTTTGTGCAATTTGCGAATTTTAAAGACTCTCACGCGCCCCAGGATGAAATCGTTCATAGAGCAAATATCACTGGAATCGCAAATATTGGTGATTACTTGCGGCTAAAAATGGACGAGCCCCACCATGAACTTGCAGACGAGGCCAAAGACATTGAATGCGGCCGATGTGGAAAACGCCTCTCAAGTTCGGAAGTCACAGAACATTGCATATCATGTTTTGATCAACAGCCAACAACTATCATCAGTGAGCACCCTGCGCCACAACATAtccaggaaaaaattccggagcaAGGCACGGTGCGGAACGTCGAGGCCATTTCCATTCAGTACACATGTGAGATTTGTGGTAGGATATTCAAAAAGAAGGAATTGTTTGAAGAACATCATAAATCTCATGCTGATGATTCAATGAGAATCATATTTTCTCCTGCAGAAAGTGATACTCACCTGAGCGAATTTGTGCGGGTCCCTTCAAAACCAGAGGCTGCGAATCACCTGTCTTCCCAAGACCAAGTCAATTCAGTGGTCGTCTCTTACGCAAACCAAGTTAGTGGTGATGAAATGAGCCCGCAGGTGTCTCAAGACTTTTTAGCAACGGAAATAAAGGCTGAGGACCAAAACCAATCTCAAGCCACCGTCGCGTGTGATGTCTGCGGAAAGCCGTTCAAACGAAAAGAACATCTATTCCAGCACCGGAAATTACACTCAGGAGAGCGACCGTTTGTCTGCAGCACATGTAACAAAGCCTTTGGTCGCAAAGAGCATCTACTGAGGCATATGTTAGCGCACACTGGGCAGAAGGTTCATGACTGCGATCTTTGCGGGAAGTCTTTCAGCCGGAAAGACAACTTACTGAAACACAAGAAAATCCATGGTATATCTGGACCTTTTAGCTGTGAAATCTGTGGCAAATCATTTGTTGTGAAGCATTACTACATGTTGCATTTGAATTGTCACCAAAATGAACAAAATGGGGAAGACCCAGATAACCCTCTGCGCTGCGATGTGTGCAATAAGGTGTTCAGTGACAAAAGTCACCTGCTAACACATAAAGCGCGCCACCGCAGCCGAGGGAAGATCCAGCAGCGCCTGCCACAACGCCAGCAATCACAGGATCAGTCGCCCCATGATCAACAGCAGCAACAGGCACAGCCGCAGCAATCTCAGCAGCCACAACAAACGCAACAGACACAAGTTCAGCAGAGTGAAATGCAATCCCAATTGACGCAGGTTGTGCAGTGCCAGTCACCAGTTGCGGCTACTTCAAGCTCTAATGAGGAAAATCAAGATCCTCTCTCTACAGTCAATACAGCAGCCATTTTAGCCCCTAGCATTCTGCACACAAGCTCAGCGCAGGTTTTTCAGATGCCCACCGGAACAACGTACCTCTGCACCCCGACCATCACCTCAAATCAGTTCATTGACAACCTCCGTAGACTGAGTTCACCAGCAACTTGA
Protein Sequence: MAGYRRVSYYDLCRLCTASDGTKMHIFREEGRRRQIPTKIQLCLPLQINEDDSLPKSICNNCADKLESFYNFRESCLTAEAMLEGFQDFKREGMVYVKDETLVKAETSQLPKEEDSPNNVQVVETSCMVPVSVEGLQNLVQAGAVHIINDPASDKGLQYKIPIPLQLQCGTTVIDSSQQIRYNIAEVSPQTAKSVQEASQLLQTANHKESQNFSEKASHNSGTQTDSNREVVISQAALNNDMFVQFANFKDSHAPQDEIVHRANITGIANIGDYLRLKMDEPHHELADEAKDIECGRCGKRLSSSEVTEHCISCFDQQPTTIISEHPAPQHIQEKIPEQGTVRNVEAISIQYTCEICGRIFKKKELFEEHHKSHADDSMRIIFSPAESDTHLSEFVRVPSKPEAANHLSSQDQVNSVVVSYANQVSGDEMSPQVSQDFLATEIKAEDQNQSQATVACDVCGKPFKRKEHLFQHRKLHSGERPFVCSTCNKAFGRKEHLLRHMLAHTGQKVHDCDLCGKSFSRKDNLLKHKKIHGISGPFSCEICGKSFVVKHYYMLHLNCHQNEQNGEDPDNPLRCDVCNKVFSDKSHLLTHKARHRSRGKIQQRLPQRQQSQDQSPHDQQQQQAQPQQSQQPQQTQQTQVQQSEMQSQLTQVVQCQSPVAATSSSNEENQDPLSTVNTAAILAPSILHTSSAQVFQMPTGTTYLCTPTITSNQFIDNLRRLSSPAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -