Btab013021.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:1233345-1251451[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.077 3.5 7.9 0.2 2 23 343 365 342 365 0.95 2 12 0.0022 0.097 12.8 3.3 1 23 424 446 424 447 0.93 3 12 0.016 0.73 10.0 1.2 3 23 465 486 463 486 0.94 4 12 0.036 1.6 9.0 0.3 3 23 541 562 540 562 0.97 5 12 9.3e-05 0.0042 17.1 0.2 2 23 588 609 587 609 0.95 6 12 1.7 75 3.7 0.2 2 23 636 657 635 657 0.92 7 12 0.00013 0.0057 16.7 0.7 1 23 663 686 663 686 0.97 8 12 0.00055 0.025 14.7 2.6 1 23 692 714 692 714 0.98 9 12 0.00044 0.02 15.0 2.4 2 23 721 742 720 742 0.96 10 12 0.19 8.4 6.7 0.0 1 23 748 772 748 772 0.95 11 12 1e-06 4.6e-05 23.2 0.2 1 23 778 800 778 800 0.96 12 12 0.0021 0.093 12.9 4.5 2 23 807 829 806 829 0.95
Sequence Information
- Coding Sequence
- ATGGAGCTGCAAGATCATGGGTATTCTTCACCCTCAGTTTCAACCGTGAAGGAAAATAGTCCGGTGAAGATTGAACCGCCTGACTTTTCTCACCTCTGTCGGATTTGTGCTAACCGGAATGAATACCTCATCCCAATCTTTGAAGGAGAGGGGATTCAATTGGATCTCAAACTGAGAGTAGAAAAATATCTTCCATTGACAATTGACCCATCTGATGAACTGCCATCCAGTATGTGCTATCAATGTGCATCGTCCATCACGTCATGGCATGATTTATTTGAGAGCTGCATCACAGCTGAAAAACAGTTAAAGGATATGAAGGAAGGCCGAAGTAATGAGAAAGTCACACCGGAAAGTTGCGAAAGGAAAGAAGAGAACGACTGTGATTCCACTAGCCCTAACATAAAAGGTTCGATTCTCCAGACGTTACTTGAAGAACAAACAAATTCTCCAGACTTTTCACCACCGGCGTCGCCATCAATGGACGATGTTGAAGAAGTCCCCTCAAACAATATGAATTCTACCGAGGCAAGCAGTAAAGAAGTCACATCAGAAAAGTTGCTACAATTGTTGAGCAAAGGCGATGGCTCCAGCACCAATCAAAATTCCTTATTCCTCATTATCGATAAGGCCAGACCGCAGTTGAAAAGGCCAAAAGTAGTAATTAAAAATCCTAAGAAAGCACCGCTTAAAATTCTGCCGAAGAAAGGAGGAGAAACAAAAATCGTTCCGAAACAAGTGAAAATCGCGCCAATTCCAAACCAGATCCCGATGTCACAACTAAATCCGAAAATTCGTATTGTGCCGCTGAACATAGCTTCCACGCAACAAACTGTGCCGCTGAAAATAGTTCCTACCCAACAAAGTATGCAGCTGAAAATTGTTTCTCCCCTACCGCAGAAACTACCCCCTCTGGTGCCCATATCCTCCGATACCAGCCAAACATTTGAAATGGTCGAAGCCACTCCCCCAACAACTTCAGAATTGCCGGAGAAACCCTACTTCGATCTGGGCAATGGAGAATGGGTCTGCTCGCTCTGCTACTTCTTCACGCCCGACAAAGATCAACTCTTCGACCATCAGGCCCGCGAGCATTATGATTTACTCAAGGACAATAGTGGATTTTTGCAGGAGGTATCGAAATCTTGGTTCTGCGTTCCGTGCAGTCTCCAATTCACCTGTAACGAGGGGCATCGCTCCCATCTGAAACGCATGCATCCGACCGCCCTCCAGGATCAAGATAACAGGTATCAGAAACTTGCCGCGAAGTACCTTTGCGACCTTTGCGAGAAAGTATTCTACGACAAGACCACTTTCCGTCAACACAATAAAATCCACCACCTTTTCGCCAAGCGGACTGTGCTAGACTGCCTGCAGAAACGCTCCTGTCTATGCGAACTCTGCGGCATCATCTGCGAGTCCCCCGATTCTCTCAGGGACCATCTTAAAGACAACCATCCGGACAAGATCGTCTTCGTTTCGAAAAGGAAAGCAGTAGTCAAAAAGTACGTTTGCACAGTCTGTTGGATCGAGCAGGGCTCCCTGGAAAAGATATGCGAGCATCTCAAGGCAGAGCACGGTGTgaagaaagaaaacttttcgagTTTTCACAGGCTGCTATGTCAGTCGTGCTCCGAGTCGTTCGATACTGAAATCCAACTGGCGGAACACTACAAGAGTAACCATCTCACGAGGCGGTACAAAAAATTAGCGATCAAAACGGAAAGTAGCCTCAAAAGGGTCAACGCGGACCAGAGCCTGATGTGCGATCTATGCGGCAAAGTCTTTTCGACGCGCGGCAACATGTTGGGTCACAGAGAGCGGCATGTCCTCCCGGAGCACTGGGCCAAACACCAAGACAAGCTCGTGGAGTGTCGTGTCGTGATCAACGGTGAGACCAATTGGCAGTGCCCCTCGTGCCCGAGGGTCCACGAGAAAGAAGAGGAGTTCATCCGTCATTTAGTGCTCCACGACCAGCCCAAGAGTTTCGTCTGCCACGAGTGTGGGTTCCAGACCACTCGCGACCCGCTTCTTCGTCGCCACATCAGAGTGGTTCATATGAAGGCTCGCGATCACAAGTGTGACTTCTGCGGCCTGGCTTTTGGGTCGAGGCGTACCCTTTCAGATCATCGACGTCGACATACAGGTGAAAGACCGTGGGTTTGCAAGGTATGCTCCAAAACTTTTCCGAACGCGACCTGTCTGTACAAGCATAAGCAGTCGCACACGGACTACTTTCCCTTCTCGTGTGATTGGCCCGGTTGTGATGCCAAAGCCCGGACGAGAGGGAGGCTTGAGACTCACATGGGGATCCACACGGGAGCCAAACCGTATCCTTGCTCCATTTGTCCGAAAGCCTTCAGGAGAAGTGGGGACCTGAAGAAGCACGAAACTGTGCACACTAATTTAAGGCCGTGCGTCTGTGATCTGTGCGGTCGTGCTTACAAGCACAAGAAGTATCTGTCGTACCATAAGAGATCCGCTCATCCTAATTACGAACCGGACCATGACTCGCTGAAAACAAGCTAG
- Protein Sequence
- MELQDHGYSSPSVSTVKENSPVKIEPPDFSHLCRICANRNEYLIPIFEGEGIQLDLKLRVEKYLPLTIDPSDELPSSMCYQCASSITSWHDLFESCITAEKQLKDMKEGRSNEKVTPESCERKEENDCDSTSPNIKGSILQTLLEEQTNSPDFSPPASPSMDDVEEVPSNNMNSTEASSKEVTSEKLLQLLSKGDGSSTNQNSLFLIIDKARPQLKRPKVVIKNPKKAPLKILPKKGGETKIVPKQVKIAPIPNQIPMSQLNPKIRIVPLNIASTQQTVPLKIVPTQQSMQLKIVSPLPQKLPPLVPISSDTSQTFEMVEATPPTTSELPEKPYFDLGNGEWVCSLCYFFTPDKDQLFDHQAREHYDLLKDNSGFLQEVSKSWFCVPCSLQFTCNEGHRSHLKRMHPTALQDQDNRYQKLAAKYLCDLCEKVFYDKTTFRQHNKIHHLFAKRTVLDCLQKRSCLCELCGIICESPDSLRDHLKDNHPDKIVFVSKRKAVVKKYVCTVCWIEQGSLEKICEHLKAEHGVKKENFSSFHRLLCQSCSESFDTEIQLAEHYKSNHLTRRYKKLAIKTESSLKRVNADQSLMCDLCGKVFSTRGNMLGHRERHVLPEHWAKHQDKLVECRVVINGETNWQCPSCPRVHEKEEEFIRHLVLHDQPKSFVCHECGFQTTRDPLLRRHIRVVHMKARDHKCDFCGLAFGSRRTLSDHRRRHTGERPWVCKVCSKTFPNATCLYKHKQSHTDYFPFSCDWPGCDAKARTRGRLETHMGIHTGAKPYPCSICPKAFRRSGDLKKHETVHTNLRPCVCDLCGRAYKHKKYLSYHKRSAHPNYEPDHDSLKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -