Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:883973-897471[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.4 2e+02 2.4 2.9 1 10 277 286 277 288 0.91

2 9 7.2e-06 0.00032 20.6 2.2 1 23 304 326 304 326 0.97

3 9 0.00012 0.0052 16.8 3.5 1 23 332 354 332 354 0.96

4 9 0.00044 0.02 15.0 1.8 1 20 360 379 360 380 0.94

5 9 0.00026 0.012 15.7 6.6 1 23 397 420 397 420 0.97

6 9 1.9e-06 8.4e-05 22.4 4.4 1 23 433 455 433 455 0.97

7 9 9.7e-06 0.00044 20.2 5.3 3 23 569 590 568 591 0.97

8 9 6.6e-06 0.0003 20.7 1.0 3 23 624 645 622 645 0.94

9 9 0.00031 0.014 15.5 0.2 1 23 652 674 652 674 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.4	2e+02	2.4	2.9	1	10	277	286	277	288	0.91
2	9	7.2e-06	0.00032	20.6	2.2	1	23	304	326	304	326	0.97
3	9	0.00012	0.0052	16.8	3.5	1	23	332	354	332	354	0.96
4	9	0.00044	0.02	15.0	1.8	1	20	360	379	360	380	0.94
5	9	0.00026	0.012	15.7	6.6	1	23	397	420	397	420	0.97
6	9	1.9e-06	8.4e-05	22.4	4.4	1	23	433	455	433	455	0.97
7	9	9.7e-06	0.00044	20.2	5.3	3	23	569	590	568	591	0.97
8	9	6.6e-06	0.0003	20.7	1.0	3	23	624	645	622	645	0.94
9	9	0.00031	0.014	15.5	0.2	1	23	652	674	652	674	0.98

Sequence Information

Coding Sequence: ATGGCTTGTGCGAATAAGTCGGAGTACGACCAGATTTGTCGATTGTGCACCTCGAGTTTGGGGCAGGGGCCTTATCACATTTTCGACGATGATTTCTCCGATCAACTCCTGCGGAAGATTGAGGATTGTTTGCCGATCAAGgtATCTGAAGAAGATGATTTACCAAAATCTGTTTGTGGTGAATGTTACTTGAAATTAGATGACTTTTACAACTTCCGTGAATCTTGTCGAAAAACTGCCAAATTATTTGCCAAAACAGAGGTTCCGGCATTGTTACTTAAGGTACCAGAGGTGCAAGAAAAACGTTTTGGAAACAAATCTGCCAATGAAAGGAGTATCCAGGGGGAGTGCAGGGATGAAAAAGATGGCCAGCTCGTCATCTGCGAGCCAGAAGAAAGCCAGCATGCCAATGGCGACACCATCGCTGACACGGCATCTGACGAAGATGATGAAGAATCATTGCATGAAAGATCGAAAAAATTGCCTGAATTGGGAGAGCCCTGCTCAGAAGATTACGTCCtaatgaaagaagaaacatttGACCTAGATGTGAAAGATACCAAagctGGAGGATCAAATGTTCTTGCTGATTACCTAGTAGAATTCAACCATAATAGTCATGACCGGGAGCATGATCATGAAAAAGAGCGTGAACGGGAACTCATGAAAGATAAGGATATTTTTGAGACGCAAAAGCTGAGGAAAGAAGTGTTACCTCCAATGTGGGATGTCTATGAGAAGACAGTCAGCAACAAGGAAAATGACGGAAAACTCTACGATGGTGTTATCAAAATTACCCACAGGCGCTACATTGTTAGTAAAGGGGCATTTCCATGTTCACTTTGTGGTGAGTGTTTTGAATTTGACCAAGGCCGAGGCCGTGATGACTCTGAAGAAAAAGCACGTCTTTTTGATTGCCATGTTTGTGGGAAGCTGTTCCCGCGTCGCAGTTCCTGGAAACGACACTTAAGCACGCATGAAGACATGAAACCGTACTTATGCCGCATCTGTGGTCATGGCTTCAATCGCCGCGAGCACCTCTCAAGACATCTTCTCTCCCACACCAATACAAAACCGTTCAACTGTACTGCTTGTGGTAAACTTTTTACCCGTAAAGAGCATTTGGCAAGACACCATCTGTGCAGTCCAACCTGCGTCTCTGCAGACATGAAGGAACAGCTGCGTCCGTTCTGTTGCGAAGTTTGTGGCCACGGGTTTGTGCGAAAGGAGCACCTTTTGCGTcatagaaagaaaaatcatgatctGGACCCCCCTGAAACTGCCGAACCTAAACCATTCGCCTGTGATGTCTGCCATAAGAACTTCACACGCAAAGAGCACTTGAGAAGACATCAAATCATCCACACCCGAGAACTCCTCCTAAATTCTTCACCGTTCGATCTTTCACTCATGGCAAGTGAAAAACCCTTCAATTCTGAGGTATCCATGTTTTCTGTTGATCGTAGCCGGAATAACTCCCTTGAGCCTGCCGAGGCTTTGTTGGAAGGGCAGGAAAGTGAAAAAGCCATGGATCTTTCGAAAGAGGAAGAAAGCGATTGTGAAGAGGATGAAGACACTTTTGTTCCACCTGCACCACAAGTCTCCTTGGAAATCAAAGAAGCCTCTACACCTGTAGTCCCACCCATGCCATCAATTTTGTCCATTCCAAGTCCATCAAGACCCAGACTTAAAGCGAAAACTTTATGTGATATCTGCAACAAAAACTTCTCTCGTCGCAGTCATTTGCTTCGACATTTGAAGCGGATTCATCATGTCAGCCTTCCAACCCGCATGCGGCGAAAGCGAGAGCCTCAGCCTGGCGATGAAAATGGAAACTCCTTGCCAAGTGAAGACAGTACCCCGCAGAACTGTGAGATTTGTGGGCGGACATTCGCTCGTCGCCATTTGCTCGAACGCCATCGTGAAGTGATGCACCCGAGTGAAGCGGCCCGCTATGAGTGCGTTACTTGTGGACAGAAGTTTGTTGAAAGCCATCTCCTGGATGCTCATATGGCCATCCATGGCAACACCATTTGTGATAACTTCCTTTGGATGATGTGA
Protein Sequence: MACANKSEYDQICRLCTSSLGQGPYHIFDDDFSDQLLRKIEDCLPIKVSEEDDLPKSVCGECYLKLDDFYNFRESCRKTAKLFAKTEVPALLLKVPEVQEKRFGNKSANERSIQGECRDEKDGQLVICEPEESQHANGDTIADTASDEDDEESLHERSKKLPELGEPCSEDYVLMKEETFDLDVKDTKAGGSNVLADYLVEFNHNSHDREHDHEKERERELMKDKDIFETQKLRKEVLPPMWDVYEKTVSNKENDGKLYDGVIKITHRRYIVSKGAFPCSLCGECFEFDQGRGRDDSEEKARLFDCHVCGKLFPRRSSWKRHLSTHEDMKPYLCRICGHGFNRREHLSRHLLSHTNTKPFNCTACGKLFTRKEHLARHHLCSPTCVSADMKEQLRPFCCEVCGHGFVRKEHLLRHRKKNHDLDPPETAEPKPFACDVCHKNFTRKEHLRRHQIIHTRELLLNSSPFDLSLMASEKPFNSEVSMFSVDRSRNNSLEPAEALLEGQESEKAMDLSKEEESDCEEDEDTFVPPAPQVSLEIKEASTPVVPPMPSILSIPSPSRPRLKAKTLCDICNKNFSRRSHLLRHLKRIHHVSLPTRMRRKREPQPGDENGNSLPSEDSTPQNCEICGRTFARRHLLERHREVMHPSEAARYECVTCGQKFVESHLLDAHMAIHGNTICDNFLWMM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -