Btab003976.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bemisia tabaci
Gene Symbol
RREB1
Assembly
GCA_903994105.1
Location
NW:1297901-1378874[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00077 0.035 14.2 2.5 2 23 80 101 79 101 0.96
2 16 0.00038 0.017 15.2 0.1 1 23 116 138 116 138 0.98
3 16 1.6e-05 0.00072 19.5 3.4 1 23 144 167 144 167 0.98
4 16 0.92 41 4.5 0.2 1 23 245 269 245 269 0.90
5 16 0.49 22 5.4 2.9 2 23 275 297 274 297 0.94
6 16 0.067 3 8.1 0.5 1 20 347 366 347 368 0.91
7 16 0.022 0.97 9.6 0.5 1 23 526 548 526 548 0.97
8 16 0.00064 0.029 14.5 1.3 1 23 558 580 558 580 0.99
9 16 0.0024 0.11 12.7 3.8 1 23 586 609 586 609 0.97
10 16 0.00098 0.044 13.9 2.1 1 23 1044 1067 1044 1067 0.95
11 16 0.0019 0.086 13.0 0.4 2 23 1305 1326 1304 1326 0.97
12 16 0.012 0.54 10.4 3.5 1 23 1332 1355 1332 1355 0.97
13 16 0.0022 0.098 12.8 1.8 1 23 1388 1412 1388 1412 0.95
14 16 0.28 13 6.1 2.0 1 23 1504 1527 1504 1527 0.96
15 16 0.002 0.089 12.9 0.6 2 23 1580 1601 1579 1601 0.97
16 16 0.0009 0.041 14.0 5.0 1 23 1607 1629 1607 1629 0.98

Sequence Information

Coding Sequence
ATGCAGGACATGGCAACATTCCATCCTCAGTTCAATGCTGTTTCCATTCCCTCACCTGGATCCGTCGCTAGATCTCTTGaaatgcgTTCGAAACTTCCCGCCAGCGTGAAAAACGAGGATCTCCAGTTGCGCATCGGGAAAGAAGGGTTCGAGCACAAGAATGATCTAGAATATGGATTGACAAAGAATGAATCGCTAGAAAATGGAAGAGCCAAAAGTGACAACGAACTGCAGTGCGTTTGTCCAATTTGCAAGACTGCCTTATCAAATCAACACGACTTCACCCTCCACATACGATCTCATAACAATGATTCCGAGCCATCAAACGTGAATTCCAGCAAAGGCTTCACATGCCGTATCTGCGGCAAAGTCCTCGGCTCTGCCAGCTCACTGGATCGCCACGTCCTAGTCCACTCAGGAGAGCGGCCTTTCCGCTGTCACATCTGCGGACTCCTCTTCAAAACCAACGGAAACATGCACAGGCACATCCGGACAGCTCATAATCTCCACGGAAGAGTTAACGAGTCTAACTGTAATGAAAGCGATAGTAGCACCGATAGTAATTCAGAAAACCAAAAATCCcctttcttcaataaaaaacggagaGTTAATTCTTCCACGGGAGAATTCAACAACAATAGTATCGATATGCCTTCGAAATGCGAGAGAACGCGCGACCCTAGCTCGAACGCAATCGAGTTTAGACAAAGGATCAATTGTGATGGGCAGTGGTTCAGTTGCCCAGTCTGCAGCAGGGAAGATTTTTCCACGCTGCACGTTTTGGAGAACCACATAGAGGATGCACACCCcgattataaaataaaatgcaatcCGTGTAATTTAGAATTCTCTAACCATAAGAAACTTAATCTACACCGAACGATGAAACACCCCGATGAGGAGTTGAAGTCGAGTGAAAAAGGATTGGTTGGATTCAAAGACTTGACATTCGTCGATTTTTCCAGTGAGAAGTTCCCGTACATCGCTAAAACAGTTTGTGAGAAACAGCTCCATCGATCTGCTAGtctatttttgaatttccagtGTGAAAAATGCCATAGAGCGTTTCCATGCGCGGACGCGCTAACTATTCATGAGCAGGCATGTCTCTCGCTGAGCTATTCTTCCTCTGTTGAAAGCTACATTGAGCAGGGAGACGTTTCTTCCAGCGAGAACGAGGGACCTACGGATCTGAGCTCCAAGTCATTCAGAAAATGGAACTATTCAATGAGCTCCACGGAAGAGGACAAAAAGCGTGACAGCTTTTTCGCAGGTTTAGATTTACAAAACAGATCATCGAGTTTATCTCCTAGCAACTCTccacaaaaattgcatttatttaAACGGGCTCTGAGCATGAACGGAACCCTAGAAAACAAAGACCTGGCCGATATCCAAAGTATCATCAATGTCACCTCGGCTAACTTCATAACGGACCTGTCTAAATCCCCTCAGCCGTCCAGCTTAGAAGTGACCCCTCCAGACTCGGGCTCCAGGAATTTTGATCTCAACGCCGAGGAAGAACAGCAAGACTGCTTTGCGGCCGAGTTCCGGAAGATGAAGTTAGAAGGCAAGTTCCCTTGCCGCCTTTGCAAGTCGGTTTTCACGAACTTGCGAGCACTCAAAGGTCATAATAGGATTCATTTAACCAATAGCCCGAGCAACGGCATTTATCGCTGCAACATGTGCCCTCACCAGAACACGGATAAAGCGGCGCTCATACGTCACATGCGGACCCACAACGGGGAGAGACCCTACCAATGCTCCATTTGCCGCTACGCATTTACGACCAAAGCCAACTGCGAAAGACATCTGAAGAACAGGCATGCGAAAGCGTCGCGAGAGGAGGTGAAGAAGTCAATTATCTATCACCCATCTGAAGACTCTACTAACAGTATACcggatatgaaaaatgtaaaacgtCTACTTTTTGCAGAGTACCAAGATACTCTAAATCCTGGAAAGGAAACGGAAGCAATGATCGACAGGACGCTTTTACCGGATATCAAAAAAGAATCTCCAGAGCGTTCGACAATTACTCCACCTTTGTCCCATCACTCTGATGAGCTCAAGCGACCAGGGAGCGATAACGATCGAGATGATATCGAAATAAAGAAACCCCATCTGGACGAAAGCTCCCTTTCCTCAGATGACGAGGACAGTGAGAGAAATGAACTCGATCAGACTTTTAAATCTGTAGAGAGTGAAAGTTTGCAGCATGAAAGTTTGAACCACCATCCCTTAGATTTGTCCATGGATGTCCTGGATTTGAGCAAGAAGAAGAGAGACGATAGTGATGTGAGCTTGTCCGCTGAAAAATGCAATAAGAGTAGGAATTCAGATTTTTCTGCTTCTGAGGATGAAGACTTTGAGACGGAGGACAATTTGGACGATGAAGAACAGCACGCTCCACAAGACTTGTCTAAGAAGTCAACCTATGCAAAATTGGACAGGGTATCTAGCTCTCCTAATTTTACGAACAACGCTGAATTATCGGATGAAGTGAAGTCGCTGAAAGAGGAACAGAGAGCTTCGCCGTCTGAGAGCGCATACCGAAAAACTGATCCGAAAAATTTGTTGAGCAACTTGTACGCCAACAACTTGAATCTCAATTCACACCCACCCTACTTGGGCTCCGGTCCTACTTTCCCATTTGCTGCCGCGCCGTTTCCACCATACCTCCTGCCACCTCCCCCATTCATGTTTTCCCCGACAACACCAGAACTCGCGGCGGCCAAAGAGCAGTGGCAGAAAGAGATAATGCGCGGCTTCCAGCTAACTTCTGGTGGCTCATTGATGCTGGACCAGTTATCCGTCGTCTCAGCAGCGGACAGATTCCAAGCCTTACAACAGCACGCGCTGGCCGAGTTCAATCGACAAATGGAGTCTGCTAAAAACGAATCGCTGACGAAATCCTTCTCTCCGACGGCCAAGTCACCCGATCTGGGTCAGCCACCCGCAACTCAAGAGATGACAAATTTCATGACCCAAGAAAAGCAATCACCCGACAATATCACGCAATTACCAAAGTCTTTGAAGAACGACCCATCATCCTCCATCAAAATGGTAATCAAGAATGGGATGCTGATCCCGAAGCAGAAGCAACGCAGGTACCGCACCGAACGGCCCTTCGCCTGCGAGCATTGCTCTGCAAGGTTCACTTTGCGCTCCAACATGGAGCGGCACATCAAACAACAACACCCCCAGTACTGGAGTCAGCGACAGAGAGGAAGCAATGGATCGCGTGGGCGAGGAGGCTATCTGAAGGCTCCTTTATACGAGCCTCATGCAGGTCTCATCATTCCTTTCCCAGCGAGTTACGCTCAAAGCAACAGCAGACACTCCCTTACATCCAATGAAGAAAGCGATTCCTTCCAACGGAACTCGAGTGAAAGATCTTTGGAGTTGAATTTCCAATCGAAACCGTACATAGGTATCTCCGATGAGGTGAAGTTCGCCATTTCTCAGCAGTTGAAATCCAAGTTCCAGCATGAGGAGAGGGATGACGAATCTGATGCTGGAGAGGAGGAGTCCAGAGACGACGAAGATATGGAAGAACTGGTGAtcgatgaagaagaagaggagaaatcTTTGGAGGTGCCGGAAataaaggaagaagaggaggaggagaagaaatcTACTTCGACGccaaagaaagaggaaaatgcAGATTTGGCTAGCGTTTCTCGCATCTTGGATAATGCATCGACGCAAACCTTCAAGCAGTTCTTTAAGGCCGAGGATGAGAATGCGGCTGGTGAAGCGAgtgaagaggaggaggagggttTCATGCCTGGCAGCACCAGCGAGGGCAATATCTCCGGCAGTGATGAGAACAAGTCGGAGCCAGAGAACAGCAGCACAGgtcaagtaaagaaaaaaagcgCTTACTCCTTGGCACCGAACCGAGTGTCATGCCCATATTGCAGCAGGAAGTTCCCTTGGACATCCTCTCTCCGCCGCCACGTTCTGACCCACACGGGTCAAAAGCCCTACAAATGTCCCCAGTGCCCTCTTTTATTCACCACCAAGTCAAACTGCGACAGACATTTACAGCGCAAACACAGCAGTCCAGTCCAAGCCGCCGAGGTGAACCCCGTCGATTGCAACAAGCCCAACTCAGCACTCAATTTCACGACCCGCAACGTCCCAGAGAGACCTTACAAATGTAAAAACTGCCCAAGTTCAACCTTCTCTACGCTAGACAACCTCAAGAAGCACATGTCCGAGAAACACAATGGAAAACCGGTAGAAAGTGAGAGACTTGACAGTGGCAACCATAGCGATTGCGAGAACGAACAACGCGATGGCAACTTCAGCGAGTACGAAAGTCAGGGGAGCAGCGAGGAAATAGATGTTGTCAAAGACTCGCCTCGCCCCGAGGAGAGACACAATTCTGAGGTAGAGAGCCGGTCCAACAATCCTCCACTGCTCCTTCAGCCGACAGTGGACTCTTCTACACCAACGATTGACCAGGTTTCAGTTGTGCCAGGGTCGACGGATTTGCCGTTCAAATGCCACTTGTGTGACAGTAGTTACGCTGAGAGGCACGAGGCCTTGGATCATATTCGGGACCGGCACTCGACAGAATTCCAGTTGCTCATCTCAAAAGGTGCTCTCGATGCCAATGGATTTGTTAACGAGGAAAACTCGCATATAGAAGAAAACTCGACCCATGGAGAGGAGAATATTGAACAGCTGAGAGGAAAGTTTCCTGATTATGCTAACCGCAAGGTGAAATGCGCTTTTTGCCTGCGCCGTTTCTGGTCAGCGGAGGATCTTCGACGGCACATGCGAACTCATACAGGTGAGCGTCCATTCTCATGTGATATCTGCGACCGCAGGTTCACTCTGAAGCACAGCATGCTGAGACATCGCAAGAAGCATTCTTCAGGCAACAATTTCGTGCAGAACCCGCTGACCGATGACCACTCAGCTCACAGTGACGATGATAATGGCCTCCTAGCTTCAAAACTGCCCGTACCGGTGATTAATCACAATAACAACAACATAAACTCGCCATTTAAAGCTGTTTTCACGAACTCCCTCAAGTTCTGGAAAAGCCACAATGCTCAAGGGCCGAAGGGTCTTAGAGGTGACTGTGATGAAGGCAATGACTTGATCGGTAATTTATTGGGCATACACGATAAGTCTATAATTGATAAAATGCTGCTTTCGAAATCACCTGACGATGTCGCTAAACTGCTTGGTGTTCAAAAATAG
Protein Sequence
MQDMATFHPQFNAVSIPSPGSVARSLEMRSKLPASVKNEDLQLRIGKEGFEHKNDLEYGLTKNESLENGRAKSDNELQCVCPICKTALSNQHDFTLHIRSHNNDSEPSNVNSSKGFTCRICGKVLGSASSLDRHVLVHSGERPFRCHICGLLFKTNGNMHRHIRTAHNLHGRVNESNCNESDSSTDSNSENQKSPFFNKKRRVNSSTGEFNNNSIDMPSKCERTRDPSSNAIEFRQRINCDGQWFSCPVCSREDFSTLHVLENHIEDAHPDYKIKCNPCNLEFSNHKKLNLHRTMKHPDEELKSSEKGLVGFKDLTFVDFSSEKFPYIAKTVCEKQLHRSASLFLNFQCEKCHRAFPCADALTIHEQACLSLSYSSSVESYIEQGDVSSSENEGPTDLSSKSFRKWNYSMSSTEEDKKRDSFFAGLDLQNRSSSLSPSNSPQKLHLFKRALSMNGTLENKDLADIQSIINVTSANFITDLSKSPQPSSLEVTPPDSGSRNFDLNAEEEQQDCFAAEFRKMKLEGKFPCRLCKSVFTNLRALKGHNRIHLTNSPSNGIYRCNMCPHQNTDKAALIRHMRTHNGERPYQCSICRYAFTTKANCERHLKNRHAKASREEVKKSIIYHPSEDSTNSIPDMKNVKRLLFAEYQDTLNPGKETEAMIDRTLLPDIKKESPERSTITPPLSHHSDELKRPGSDNDRDDIEIKKPHLDESSLSSDDEDSERNELDQTFKSVESESLQHESLNHHPLDLSMDVLDLSKKKRDDSDVSLSAEKCNKSRNSDFSASEDEDFETEDNLDDEEQHAPQDLSKKSTYAKLDRVSSSPNFTNNAELSDEVKSLKEEQRASPSESAYRKTDPKNLLSNLYANNLNLNSHPPYLGSGPTFPFAAAPFPPYLLPPPPFMFSPTTPELAAAKEQWQKEIMRGFQLTSGGSLMLDQLSVVSAADRFQALQQHALAEFNRQMESAKNESLTKSFSPTAKSPDLGQPPATQEMTNFMTQEKQSPDNITQLPKSLKNDPSSSIKMVIKNGMLIPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWSQRQRGSNGSRGRGGYLKAPLYEPHAGLIIPFPASYAQSNSRHSLTSNEESDSFQRNSSERSLELNFQSKPYIGISDEVKFAISQQLKSKFQHEERDDESDAGEEESRDDEDMEELVIDEEEEEKSLEVPEIKEEEEEEKKSTSTPKKEENADLASVSRILDNASTQTFKQFFKAEDENAAGEASEEEEEGFMPGSTSEGNISGSDENKSEPENSSTGQVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHVLTHTGQKPYKCPQCPLLFTTKSNCDRHLQRKHSSPVQAAEVNPVDCNKPNSALNFTTRNVPERPYKCKNCPSSTFSTLDNLKKHMSEKHNGKPVESERLDSGNHSDCENEQRDGNFSEYESQGSSEEIDVVKDSPRPEERHNSEVESRSNNPPLLLQPTVDSSTPTIDQVSVVPGSTDLPFKCHLCDSSYAERHEALDHIRDRHSTEFQLLISKGALDANGFVNEENSHIEENSTHGEENIEQLRGKFPDYANRKVKCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICDRRFTLKHSMLRHRKKHSSGNNFVQNPLTDDHSAHSDDDNGLLASKLPVPVINHNNNNINSPFKAVFTNSLKFWKSHNAQGPKGLRGDCDEGNDLIGNLLGIHDKSIIDKMLLSKSPDDVAKLLGVQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-