Btab012133.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- ZFAT
- Assembly
- GCA_903994105.1
- Location
- NW:2818895-2829628[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.015 0.68 10.1 0.1 1 20 124 143 124 145 0.93 2 14 0.00062 0.028 14.5 3.1 2 23 189 210 188 210 0.96 3 14 0.0014 0.063 13.4 1.0 3 23 215 236 214 236 0.94 4 14 0.01 0.46 10.7 7.1 1 23 245 267 245 268 0.95 5 14 0.00075 0.034 14.2 0.9 2 23 274 295 273 295 0.95 6 14 0.026 1.2 9.4 1.9 2 23 301 322 300 322 0.93 7 14 4.8 2.2e+02 2.3 0.2 1 23 325 348 325 348 0.88 8 14 0.00024 0.011 15.8 3.4 1 23 357 379 357 379 0.98 9 14 0.00029 0.013 15.5 1.9 1 22 385 406 385 409 0.91 10 14 0.0066 0.3 11.3 0.3 2 23 423 445 422 445 0.91 11 14 0.0013 0.059 13.5 1.7 2 23 453 474 452 474 0.96 12 14 0.0016 0.072 13.2 1.5 1 20 480 499 480 500 0.96 13 14 2.2e-07 9.7e-06 25.4 1.2 1 23 509 531 509 531 0.98 14 14 0.0093 0.42 10.8 1.1 5 23 540 559 538 559 0.95
Sequence Information
- Coding Sequence
- atggaggaaaatccgaatcttgaaaactttaaaagtcaGgtggATTCAATGCTCAGTGCTTTAGCCCAACTGAATTCGATAGATAAATCAGTAGCTTTTTCCTTGCTGAAAAATTGCATCACGTCTGCACAAGATCAGCCAAGTGGATCTACTTCTAGTTGTGATATTTCAAAACCTGCAGAAGGAGAAATCACTAATCAACTCGAAAATCCTAATTCAGGAGGGAGCTTATCTAATGAAAGCCAACCTGTGCCGACAAACAATATTCAAACCGGGTCGCCAACTACGGAAGAAATCCCCGATCCAGGAGCTGAACCCGAAAAAAGGAATGATTCCACGCCTGAACAAAACAAAcctgaaaactcaaaatttgttTGCGAAAATTGTTTACGAAACTTTTCTACTCTGAAAGAGCTAGTTGTGCATGCGGAGTCTTATCCCAAAGGTCCAGTTGCTTGCAGAACATGCACAAAGGAGTTTTATAATGTATTTATCTTCAATCTACATTCTAAGTATGATGAATGTAAAAGGTATCGGCGGCAAATTAAGGATAGCTTaatgaaaaaatgcagttaTTGCCAGAAAGTCTTTTACAATGCTCAGCACTTTGATAGGCATTTAAGTGGGCACAAAAGGAACAACTGTCCTCAGTGCTCTGCATTATTCACAAATAGGAAGCACCTTGAGAGTCACATGTTAGAAGTTCACAGCACCAAGCTTGAGAAGAATTTTTTCGAgtgcaaattttgcttcaaaaaaTTCTCTCAGAAAAGATCAATCCTCAAACATTATAAACTGCACCATTCTAAACAATGCTCTGTTTGTACTTTTTGCGGAAAGTTCTTCGATTCTCCCCATGAACTGGACTCCCACACCTTGGAGCATGAAAGTAAAAAGTGGACCTGCGAACCTTGTAAACAAACCTTTGTACGGCATCAACAGTATTTAAAACATATGAGTGAacatgacaaatatttttgcaTCACCTGCAATGTAGGGTTCTCCTCTAGAAACAAGATCGCAGATCATGTCAAATTAGGTCATTCAATTCGCGGTGAAGAGCAGATACATCAGTGTAAGACATGCAACAATGTtttcgaatcaaaaggaaagttACTCCGTCACCTGAAGTCTCATGAAGAGAAGGGCCAGTACCAGTGTAAAACCTGCAAAATAAGTTTCAACAAAGCTAGCTCTTACAAGCAGCACCTCAGCTCGAGCTGGCATACGAACAAAAAGACACCGACCTCAGAGAATCCCAGTCTCAGCTGTCGCGTGTGCCTGAAAACATTCCCCAACAAGAATCAACTCCTGATCCATTCTCAAGAAATCCATGGAATTCTCCAAAATATCTCAAGGTGCCCGTTCTGCAATTATAAAAGTAAGTCGAAAGGAAATATGCGCAGACACATCGATCAACATACGCAACATAGGAAGTACGTTTGTGATCAATGCGGGTCTAGTTTCTACACGTACTCTTGTTTGAAAGAGCACATAACTTGCATCCATTCATCAGAGAGGAATTACAGCTGCGAAAAATGTGGGATGTCTTTCAAACTGAACAGCAGCTTGAAAAGGCACATGGCCACACACAGTGAGGAAAGAACGCAGAAATGTCATTGCGGTCAAGCGTACAAATTGGTCTCAAACTTAAAGCGGCACCAGTTGATTGCTCATGGCAGGGTGGACTCCCCAAAGAACTTCCAAAGACTGACGAAAAATGATTACGGAGAGTATGTACCAGTGGAACCCAGGAGGAAAGTTAAAACGCTTCCCGAAATGCAAGTTGATAAAACATTCCAATTAGAGAACGATCCTATTAAAAATGAGGTATTGCTGCCGATGCCGCCAACAGACGACACCGATCCTCTCAGTGTTAACGTCAACGATTGTGGACTAATGCAGTCGGTTCAAGTCATCTATCAGAACTTGGACTTCCCATCCACGAATGATGCAAAGCAATCTTTGCTTTTTACTCCGTCCATTGACATGGCACATTTACAGCTAGTCGAGAACATGCTTCAAGCTGCGTCTGTGAATGATCCATTAAAACAGACTCAAGACATATTTGTTGATCCAACTTCTCAGACTTTCCAGATAACAGATCCTGATTCTTTCTTAACTGGTGATGTCACACTGCATCCTCCATTGGAAGTGTCTCAGATAGGTAATTTAGACTTGACCAGTCACTCAGGTCACTTAGTTCCGGATGTTCCTGTTACCCACCCCTCTGAAAATCATCAAACTCTCATAGGTTCACTCAGTGATTATATTATACCGCATCAATTTCCATTCCtgaatgtttaa
- Protein Sequence
- MEENPNLENFKSQVDSMLSALAQLNSIDKSVAFSLLKNCITSAQDQPSGSTSSCDISKPAEGEITNQLENPNSGGSLSNESQPVPTNNIQTGSPTTEEIPDPGAEPEKRNDSTPEQNKPENSKFVCENCLRNFSTLKELVVHAESYPKGPVACRTCTKEFYNVFIFNLHSKYDECKRYRRQIKDSLMKKCSYCQKVFYNAQHFDRHLSGHKRNNCPQCSALFTNRKHLESHMLEVHSTKLEKNFFECKFCFKKFSQKRSILKHYKLHHSKQCSVCTFCGKFFDSPHELDSHTLEHESKKWTCEPCKQTFVRHQQYLKHMSEHDKYFCITCNVGFSSRNKIADHVKLGHSIRGEEQIHQCKTCNNVFESKGKLLRHLKSHEEKGQYQCKTCKISFNKASSYKQHLSSSWHTNKKTPTSENPSLSCRVCLKTFPNKNQLLIHSQEIHGILQNISRCPFCNYKSKSKGNMRRHIDQHTQHRKYVCDQCGSSFYTYSCLKEHITCIHSSERNYSCEKCGMSFKLNSSLKRHMATHSEERTQKCHCGQAYKLVSNLKRHQLIAHGRVDSPKNFQRLTKNDYGEYVPVEPRRKVKTLPEMQVDKTFQLENDPIKNEVLLPMPPTDDTDPLSVNVNDCGLMQSVQVIYQNLDFPSTNDAKQSLLFTPSIDMAHLQLVENMLQAASVNDPLKQTQDIFVDPTSQTFQITDPDSFLTGDVTLHPPLEVSQIGNLDLTSHSGHLVPDVPVTHPSENHQTLIGSLSDYIIPHQFPFLNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -