Basic Information

Insect: Bemisia tabaci
Gene Symbol: br
Assembly: GCA_903994105.1
Location: NW:1125818-1260404[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00051 0.023 14.8 1.0 2 23 537 558 536 558 0.95

2 9 0.02 0.89 9.8 2.5 1 23 574 596 574 596 0.96

3 9 4.3e-05 0.0019 18.2 1.9 1 23 602 624 602 624 0.98

4 9 2.1e-06 9.3e-05 22.3 0.3 2 23 633 654 633 654 0.98

5 9 7e-05 0.0032 17.5 0.3 3 23 662 682 660 682 0.97

6 9 9.7e-06 0.00044 20.2 7.3 1 23 688 710 688 710 0.98

7 9 9.4e-07 4.2e-05 23.4 0.4 1 23 716 738 716 738 0.98

8 9 1.4e-05 0.00063 19.7 8.3 1 23 744 766 744 766 0.98

9 9 0.00012 0.0052 16.8 2.2 1 21 772 792 772 793 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00051	0.023	14.8	1.0	2	23	537	558	536	558	0.95
2	9	0.02	0.89	9.8	2.5	1	23	574	596	574	596	0.96
3	9	4.3e-05	0.0019	18.2	1.9	1	23	602	624	602	624	0.98
4	9	2.1e-06	9.3e-05	22.3	0.3	2	23	633	654	633	654	0.98
5	9	7e-05	0.0032	17.5	0.3	3	23	662	682	660	682	0.97
6	9	9.7e-06	0.00044	20.2	7.3	1	23	688	710	688	710	0.98
7	9	9.4e-07	4.2e-05	23.4	0.4	1	23	716	738	716	738	0.98
8	9	1.4e-05	0.00063	19.7	8.3	1	23	744	766	744	766	0.98
9	9	0.00012	0.0052	16.8	2.2	1	21	772	792	772	793	0.94

Sequence Information

Coding Sequence: atgtcGGCAGCAGAAGAGAAAACTCTGAGGATCGGGGAGCAGACACAACTTCCGTCATGTCTGCGACAGATGCTGGAGCAAGAGTGTTGTACCGACGTCACACTTTGCTGCCAGGGGAAACGGTTCAGTGCTCATCGTGTCCTGCTCTCTGCCTGCAGCACATATTTACGGGAGATCCTCCTCATACACAGAAAGAAGAAACAAGCAACTGTGATCCTGCAAGACGTGCAGGCAGAGGACATGGAGTCCCTGCTCTGCTTTCTGTACAGCGGCGAAGTTACACTTCCGGAAAAGCGCCTCGAATCGTTCATGAGTCTCGCCCACCAACTCAAAATCTCCGTCTTCATAGATCAGCATCTCTACGAACGCTCCATCACCCTTGGCCGGCATTCTGGCGCGTCAGATTCAAAAATCTCAGAGCCCAGAAACGACCGAACTCAACCCGGAGTTGAGCAAGACAAGAAAGAAAACCTCCTGGTCGGGAGCAAATCCGAAATAGGGCCGGAAATAAGCGGAAGCTGCTGGGTTGGAGGTAGCCCCACCGGAAGTAAAAGAGCATGGCAAAGCCCGGAGAGGGAGTGCCCCCAGTGGAAGCGGAACTTTGACTGTGATACGAAACCACCGCCCCTGCCGCAGACTCAGGACCAGGGACAAACAGACGTCCTGAAGGAGAGCTATCTGATCGCCCAGAAGCTGGGCTCCCTCGAGGGTGGCGGCCAGTTCGAGCGCTACGACCAGTTCCTCTCGCGGATCGAAGCCAGCGCCAAACCGCCGCACTTCGAGGTGAAACCGGAAGCGGAGAACCAGACGGCTTTCCACTGTAACGTTAACTATCAGCACATCCTCAACTCCCTTTCGGGGGGCCCCGACGAAAAGATTCTAGTCACCCCGAGCTGCCATACTAGGTTAAGTCCCCCGGAGCATCTGATCCACTACTTCCACAGTCAACTCAACTACAACTTCGGGAATTTGGCCGCCTGCGGTCCGTACAACTTGAGCAAAGCCCCGGAGTGGCCGTGGATGCCTCCCCATGGACCGTGGGCACGCCCCGAGGCTCTACCGGAGCCGGTCATCTCGCCGCCGGGGAAGGAGAGGTTCGTGGCGCGCGGCTTGAAGACCCCCGGCGGGATCCTGACCCCCTCGCCGTGGGCCCAGAATAAGATCCCGTGCGTCGGCGGGATTCGGCGACCCACACCCAAGCGGCCCGTCATCGTGCCGCCTTGTCCGCTACCACCCCCTGGACCCACCGCTAGCGAGGAACTTAGCGTTCCAGTCCCGAGCTTAGTCAAGACACACGCATTTACTGAGCCTCTCGCAGGGAGCAGACCCCTAACTGAAGACAGAGAGGACATGATCGCCATGAGAAGTGACAAGAGATCTCCACTGGGCATGGAGAGCGCGCGCTCGGACGGGCATATAAACATTCCGAAGATGACAACGCACGCGCAGCATGGGAAGGCGGAGACCCCCGCGCCGCAGTCGACCAACAGTGGATCACAGGACCCAACATCGAAGCCGCTCAGCGACACGAATAACAATCGGTGCCCCGCGGACGCCTGCCCGGTGCCGGCCACCATGCCCGGCCAGACGCTCGAGACCAAGCGGCTCGTCTGCACCGTCTGCAAGAAGACGTTCGACGACCAGGCCAAGTTCCTGAGCCATCAGACGCAACACGCACGCGCCACCAGCACCACCACCGACGGCAAGAAGGTCCAAGCCCATGAATGTTCGTGCTGCCAAAAGGAATTCCTCAGTGCGGCCGCCCTAAGGGTTCACATGCGGACCCACACGGGGGAGAAACCGTTCCAATGCGTCGAGTGCGGGAAACAGTTCTCGCAACTGCGGAACTACAAGTACCACCGCTCGGTGCACGAGGGGACGAAGGAGTTCGCCGCCACGTGCCCGGAGTGCGGGAAGTACTTCAACGACCGCGGGTACTTGAGCTCCCACATGAAGATCCACCGGAACCGAAAGGAGTACGGCTGCGAGTTCTGCGGGAAGAGCTTCAACCAGCGCGTCGCCTACAACATGCACGTCCGCATCCACACTGGCGAAAAACCTCACGTCTGTCCCCACTGCAGCAAGTGCTTCTCCCGCAAGATGCTCCTCAAGCAGCACCTCCGGATCCACACCGGCGAGAAGCCCTTCCAGTGCGTCATCTGCCAAAAGGCCTTCGCCGACCGCTCCAACATGACGCTGCACATGCGCCTCCACTCCGGCGTCAAGCCCTACACCTGCACCGTCTGCTCCAAGTCCTTCACCAAGAAGCACCACCTCAAGACCCACATGAACTACCACACGGGCGTCAAGCCCTACTCGTGCCAGAAGTGCGGGCTCAAGTTTAGTCAGTCGAGCAATATGCGGACGCACTTCAAGAAGTGCGTTGCGACCGCGCCCAAGCAACCTAGCTTGCCCGTCAATCTGGCGGCTAGTTAG
Protein Sequence: MSAAEEKTLRIGEQTQLPSCLRQMLEQECCTDVTLCCQGKRFSAHRVLLSACSTYLREILLIHRKKKQATVILQDVQAEDMESLLCFLYSGEVTLPEKRLESFMSLAHQLKISVFIDQHLYERSITLGRHSGASDSKISEPRNDRTQPGVEQDKKENLLVGSKSEIGPEISGSCWVGGSPTGSKRAWQSPERECPQWKRNFDCDTKPPPLPQTQDQGQTDVLKESYLIAQKLGSLEGGGQFERYDQFLSRIEASAKPPHFEVKPEAENQTAFHCNVNYQHILNSLSGGPDEKILVTPSCHTRLSPPEHLIHYFHSQLNYNFGNLAACGPYNLSKAPEWPWMPPHGPWARPEALPEPVISPPGKERFVARGLKTPGGILTPSPWAQNKIPCVGGIRRPTPKRPVIVPPCPLPPPGPTASEELSVPVPSLVKTHAFTEPLAGSRPLTEDREDMIAMRSDKRSPLGMESARSDGHINIPKMTTHAQHGKAETPAPQSTNSGSQDPTSKPLSDTNNNRCPADACPVPATMPGQTLETKRLVCTVCKKTFDDQAKFLSHQTQHARATSTTTDGKKVQAHECSCCQKEFLSAAALRVHMRTHTGEKPFQCVECGKQFSQLRNYKYHRSVHEGTKEFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCEFCGKSFNQRVAYNMHVRIHTGEKPHVCPHCSKCFSRKMLLKQHLRIHTGEKPFQCVICQKAFADRSNMTLHMRLHSGVKPYTCTVCSKSFTKKHHLKTHMNYHTGVKPYSCQKCGLKFSQSSNMRTHFKKCVATAPKQPSLPVNLAAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00201813;
90% Identity: iTF_00201813;
80% Identity: iTF_00201813;