Btab009158.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:891009-906853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.001 0.045 13.9 0.2 1 20 143 162 143 164 0.93 2 25 0.00062 0.028 14.5 0.8 1 23 182 205 182 205 0.98 3 25 0.00083 0.037 14.1 0.6 3 23 213 234 212 234 0.93 4 25 6.5e-05 0.0029 17.6 0.6 2 23 422 444 421 444 0.95 5 25 0.013 0.57 10.4 1.9 1 23 475 498 475 498 0.95 6 25 0.053 2.4 8.4 0.2 3 23 506 526 504 526 0.96 7 25 0.038 1.7 8.9 0.9 2 19 597 614 596 619 0.89 8 25 0.002 0.091 12.9 0.8 1 23 633 656 633 656 0.96 9 25 0.0096 0.43 10.8 0.4 3 23 664 686 663 687 0.92 10 25 0.00043 0.019 15.0 0.4 2 23 696 718 696 718 0.94 11 25 0.06 2.7 8.3 0.1 1 23 724 747 724 747 0.95 12 25 0.15 6.9 7.0 7.4 2 23 828 850 827 850 0.95 13 25 0.00087 0.039 14.0 1.3 2 23 857 879 856 879 0.95 14 25 0.02 0.9 9.8 6.8 1 21 907 927 907 928 0.95 15 25 1.1e-05 0.00051 20.0 0.6 1 23 947 970 947 970 0.98 16 25 1.5 67 3.9 0.5 2 23 974 996 973 996 0.94 17 25 2.2 98 3.3 0.4 2 23 1003 1026 1002 1026 0.94 18 25 0.0045 0.2 11.8 4.0 3 23 1035 1056 1033 1056 0.95 19 25 0.74 33 4.8 0.6 1 23 1092 1115 1092 1115 0.93 20 25 2.2e-05 0.00098 19.1 0.1 2 23 1121 1142 1120 1142 0.95 21 25 0.31 14 6.0 0.5 2 23 1207 1229 1206 1229 0.90 22 25 0.72 32 4.9 0.4 2 23 1296 1318 1295 1318 0.94 23 25 0.99 44 4.4 1.4 1 23 1324 1347 1324 1347 0.91 24 25 0.34 15 5.9 1.2 1 23 1358 1380 1358 1380 0.97 25 25 0.047 2.1 8.6 1.8 2 23 1393 1415 1392 1415 0.95
Sequence Information
- Coding Sequence
- ATGGATTGGAGAGAGCCTCCCGAGAACTTAACCCAATTGTGCCGATTGTGTGCCTCCAATGACGATGTGCAAATCAATATATTCAGCGACAAAGGAAGGGAAAAACAACTCGTTGAGAAAATTTTCTCGTGCCTATCAGTCAAGGTTTCCCATTCTGAAAAGCTGCCAAACTCTGTATGCTATAAATGCATGACATGTCTTGAAAACTACTATGAATTTCGATGCAAATGTCTGGATGTCATCTCAAAGTTGGAAGTTCTGTCCAACAGGAATGTCCACGACCAAAAAGACCCACTTGCAATCAAAGAAGAGCCAGATGAACAATATGACACTCAGGCAACACAGCCAACGGATTATTCCAAGGCGAAATTACAAGATGCTGGAAGAATGGACATGGCTATGTATGGGGCTCCAGACGCGTACAAATTTACTTGCCAAGAGTGTGGCGAAGCTTTTATCAATCAgaatgaattatttttgcaTTCCAAGAATTGTAGAGAGGGCGAGTCCTCAGGCCAATCACAAGCCAATCCTGATAGGCCGTTTAAGTGTGACCTCTGCTCCAAATCATACATTCTGTCCAAACATCTGTGGGGTCACATGGCTACTGCTCACAGAGGTCATCCAGCAATATTCTGCCAGCCATGTACCCGAACGTTTTCATCGCCAGCCAATCTGATTGAACATCAAAGGTCGAAACATGGAGTACCTGGACCCTCCAACAATTCAACATCGCCAAGCAGTCAGACCTCTCAAGCCAACAATGTTCAACAATTGGTAAATAGCTCGCGTAACACGCTGGGCTCTCCATCACCGCTGCGAAAgATCCTGAACTCCGAAAGTAGAAAGAGATCCATCGATGAAGCGTGTGGTAGTCGACGTAAAAACTCAATGCCAAGAAAAATTTCTCGAGCTGATGAAGAAGCAGGTGATGCAAATTTGGAAGGTCACTCAGCATACATGGATAATGGCAACACCTCTGCCCAAAGTAGTAGCTCGGTAATTAATCAGGTTTCCATGTCTCAATCATTTTTTGACAGTAATATTTTTGCTAACATTCGTAACGCCAGTGCGCAAAACTCCAATGCTAGTAATCTTACAAAATCTAATTCCAacttaaatggtaattttaataCTGTTTCCAACTCCTCTCCCTCAATTTCTTCCTTCAATACTCAACCCCCGTCTCGTGCTCCCTCAAAATCAAAGAGCACTTCTTCAAATAATCCCTTCGCTAGAGTTAGTCAAAATAAAGAAAGTCTGACGTGCCTGCTTTGTGAGAAAACGTTCACAAAACGACCACTTCTAAATAAACACATGCGAGCTGTTCATGGAATTGATACGTCTGCAGTTACTGTCGGCAAAATACCCAAGTCTATGAATGATGAGGACATTGAAAACATGATGGAAGCAGAGACTGTCTTTTGCTGTGAGATCTGCACCAGAGAGTTCAACGATAGACCAAGTATGTGGCTTCACATGTTGCACGCGCATAGACAAGCAGCAGGCTTGGCTTGCGGTCTATGTTTGAAGATTTGTAACGACCGTGGTCAACTAGCTGAACACCTTGAAACACACGCCAATGATGGCACTGATCAGAAAAGGTTCTGCTGCAGTTTTTGTGGTAGACAAGACGACGCTAGGCCTAAACTCATTAAACACGCTGCTGTTCATGGTACAACTGTGAACACAATAGAAATCGTCATCTCAAATCCCAGGTATCATACACACATCAACCACGCTGCCGctcaaaacaaagcaccgccagtAGTGCCCCCTGGATCTGTCAGCTGTAAAATCTGCTCCCGAGTGTTTGGAGATGAAGAGAAGCTAATCAAACATTGCCAAAATGCTCACAAGTCTTTGAGTTTACTTGACCACACaaacaatttaatattttcatgtGAAATCTGTAgtgtttccttttcatctcggtCAGAGAGGTGGACGCATATCTACAAAAACCATACATCTGATCCACGAGTAGCTTGTCCGATTAAAACCTGTAAAAAGGTGTTCAGTTCCAATGCGCTTTTAAGTGGACATGCTGCGACCCACCATCAAGAGCAAGGCGAATATCCAAATGTCTGTGAAATGTGTGGGAAATTGTTCCAACAGCGTAGTGAATTTTATAAGCACATGATGGGTGTCCACCCCCACACTTTACCTTTTGTCTGTGGTGTCTGTCTAAAGATCTTGTGTTCAATAGATGAACTTAAAGCTCACGTGCGAGATGAGCATGAGCCACTCCCAGAGCTTCTCGAACAAATTCGCTGTGATATTTGTGCAAGGCCGTACTTAAAACATTCCAAGATGGTGCGTCACCGAGTCATGCACAATGATGGAACCGAAGCCCCCAAAGTGACCAAAAAGTTTTTCGAGAAACCAGAGTCTCTCAATTGCTCTCTGTGTCCTGACGCTGGTCTGTTCGAATCAATAGAAGTCCTCTCTGAACATCGAAGGAAATCTCACAATCTAATGGTGTGTGATTTGTGCCCCAAATTTTACGCTAAATGCTCTCACCTGTGGAAGCATGTGCACAGATGTCATCCAGGTCATCCTGATGTGACGTGTCAAATCTGCAGCAAGACATCAGCTTCTCGTATCCATCTAAAACGGCATATTGCCAAATTGCACAAAGATAGTGACCTGTATGATCCAGCAGATGATCCCCACTACCGCGGTGAAGATATGCCACATATGGCAGCATCTGGACCGCACACTTGTGAAAAGTGTAAACGAGTTTTCCGAAAATATAGTCTACTTCACAAGCATTACAAACATTGTAATGGCCCACGCCCTCCCACCACGCCAATCCCTGCAATGGTTGATGGAGTCTACCCGTGCTCAAAGTGCTCAAAGACATTTGTTCTACCAACTGCTTTACGAAAACATATCAGATCCTCTCATATTCCGCAAGTCTGTGAATTGTGCGAAGTCAGTCACGATACAAAGCAAGAACTGATGGATCACATTCGTGAGAAACATGGAACGGATCCACGTTTGAAATGTCAAACCGAAGGTTGCAGTCGGCTATTCCGACTTCAAGCAGATGCAGAACGCCACAAGAAAGAGCATGCGTCTAGATACTTCGCTCACTTGTGTAATTTCTGTGGTGATGTCTTCACAAATCGCAAGAAACTTCGAAAGCATTTGAAAAGTAACCATAAAGATCAGACTGAATTTTTATGTTACGTCTGTTGTGAACCTGAAATTTCACTGTCGCTTTTAGCAGAGCATGTGTTAGAACATCATGAGCCTTTATTGAAACAGTTTGCATGTCAGCTTTGTGGTAAGACGCATAGCTCGGGAAGTAAAGCCAACGAACACATCCGAGCCAATCATGGTAGTGAGTATAAGCCTTGTCCTATCTGTTGGAAAATCTTTACAGATAAAAGTGAATTAGAGACCCATGTCGAGAACCATCCAAAAGATGCACCTGTTGAGAAACCAGAACCAGTAAAGAAACCAGCTACCAAAAGACCGTCAAATCCCAACACCTCTAGAATCAATAAAGAACTCGCTGCTCTTACTGAAAATTCTGCAGACTTCTTGTCTTTGGCTAAATTGGAAGATGAGGCAGGTGGGGAAGTTTCAAAACGACTCAGACGCATGTTCTCGTGTATCTCCTGCACCCAGTCATTCAGAGTAATCAATGACCTAATAACTCACAGAAGATCAGTCCATGATGAATTCTGCTGTTCTTCATGTGCTCAACAATTCATCCTTGAGATCGATTTCGATGACCATATTAAAGTATGTGAACCTTTAGCAGAAGGTTTTGTAATGGGAGGCACTGAAAAACCTAAGGAAGACACACCAGCTCCAACACCACCCTCGCGCAGCTCAGGGCGGACAGTCTGGGCTTCATTCGATGCCGAAACACCTTGCGAGTTGTGTGACAAAGTTTGGACCGGCTTGAAACACTACTGGCAGCATTTAATACGAACACATAAGGAAGCAGCCCCATTCGCGTGCGGAGTATGTTTGAAATTATGCAAAGATTACGAAGACCTAGCGCACCATTTAGATGAGAAACATCTTGGAACTTTCACAAGCAaaggaaataattttgtttgtcgAGTTTGCGGTAGGTACCACAATGCCCAAAGGAAGTTACAAATACATATGGCTACTCACACAGGAAGATCCAATATCGGCACCATTCCCTCCATCCGTTGTCGCCACTGCGAACTAGTTTTCAAGACTCAGAAATTCTTTGACGAGCACATCGCCAAAGATCATCCGGGTGTCGCTGCTGAAGGTGATGCAATGCACAGTTCTTATGAAGAAGAAATTGAAACTGTATTgattaaagatgaaattcatgAAGATGACATCGACATGGAAGAAGTTGAGTCAGACGCTGAAGAAGACACAGAAAGCGAACAAGCAGAAGTAAAAGTAAAGAAAGTTGTCGGtgaagatgatgatgacgatgatgaagatgatgatgatgaagatgatgatgatgatgatgaagatgatgatgatgaggaggaggatgatgacgatgacgataATGATGACATTGAAGCAGAAGATGTTGAAGATATGTCTAAAAAagatgaagatgatgatgacgacATTGAAGATGATATAgaaaatgatgatattgaaGCAGAGGATGTCGATGATGATGAGGAAGATGATGATGAAAACGATGACATAGAGGCGGAGGATGATATGGAAGAGATTAATGATACAACAAATCCAGATGACACTGCTGAGCAACCTCCTGATCCATCAACGATCAAAAATAAAGCAAACATAAATCATTCAACGCCTAAAGATAAATCAAAGCTCAAAGAACTCAAACTGGTGGTACCAAATATGAAATTGCCAAGTGATGAGGTTAGTGATTCAACAGAGAAAGAGGAGTCAATGGATTGTGACACCGTGTCGAATACGGATGACGCAAGTCAGCCTGAAGCAGAAATCAATGTTCCTAACTATCCTGAAGCCACCCCCTGTATTTCATAG
- Protein Sequence
- MDWREPPENLTQLCRLCASNDDVQINIFSDKGREKQLVEKIFSCLSVKVSHSEKLPNSVCYKCMTCLENYYEFRCKCLDVISKLEVLSNRNVHDQKDPLAIKEEPDEQYDTQATQPTDYSKAKLQDAGRMDMAMYGAPDAYKFTCQECGEAFINQNELFLHSKNCREGESSGQSQANPDRPFKCDLCSKSYILSKHLWGHMATAHRGHPAIFCQPCTRTFSSPANLIEHQRSKHGVPGPSNNSTSPSSQTSQANNVQQLVNSSRNTLGSPSPLRKILNSESRKRSIDEACGSRRKNSMPRKISRADEEAGDANLEGHSAYMDNGNTSAQSSSSVINQVSMSQSFFDSNIFANIRNASAQNSNASNLTKSNSNLNGNFNTVSNSSPSISSFNTQPPSRAPSKSKSTSSNNPFARVSQNKESLTCLLCEKTFTKRPLLNKHMRAVHGIDTSAVTVGKIPKSMNDEDIENMMEAETVFCCEICTREFNDRPSMWLHMLHAHRQAAGLACGLCLKICNDRGQLAEHLETHANDGTDQKRFCCSFCGRQDDARPKLIKHAAVHGTTVNTIEIVISNPRYHTHINHAAAQNKAPPVVPPGSVSCKICSRVFGDEEKLIKHCQNAHKSLSLLDHTNNLIFSCEICSVSFSSRSERWTHIYKNHTSDPRVACPIKTCKKVFSSNALLSGHAATHHQEQGEYPNVCEMCGKLFQQRSEFYKHMMGVHPHTLPFVCGVCLKILCSIDELKAHVRDEHEPLPELLEQIRCDICARPYLKHSKMVRHRVMHNDGTEAPKVTKKFFEKPESLNCSLCPDAGLFESIEVLSEHRRKSHNLMVCDLCPKFYAKCSHLWKHVHRCHPGHPDVTCQICSKTSASRIHLKRHIAKLHKDSDLYDPADDPHYRGEDMPHMAASGPHTCEKCKRVFRKYSLLHKHYKHCNGPRPPTTPIPAMVDGVYPCSKCSKTFVLPTALRKHIRSSHIPQVCELCEVSHDTKQELMDHIREKHGTDPRLKCQTEGCSRLFRLQADAERHKKEHASRYFAHLCNFCGDVFTNRKKLRKHLKSNHKDQTEFLCYVCCEPEISLSLLAEHVLEHHEPLLKQFACQLCGKTHSSGSKANEHIRANHGSEYKPCPICWKIFTDKSELETHVENHPKDAPVEKPEPVKKPATKRPSNPNTSRINKELAALTENSADFLSLAKLEDEAGGEVSKRLRRMFSCISCTQSFRVINDLITHRRSVHDEFCCSSCAQQFILEIDFDDHIKVCEPLAEGFVMGGTEKPKEDTPAPTPPSRSSGRTVWASFDAETPCELCDKVWTGLKHYWQHLIRTHKEAAPFACGVCLKLCKDYEDLAHHLDEKHLGTFTSKGNNFVCRVCGRYHNAQRKLQIHMATHTGRSNIGTIPSIRCRHCELVFKTQKFFDEHIAKDHPGVAAEGDAMHSSYEEEIETVLIKDEIHEDDIDMEEVESDAEEDTESEQAEVKVKKVVGEDDDDDDEDDDDEDDDDDDEDDDDEEEDDDDDDNDDIEAEDVEDMSKKDEDDDDDIEDDIENDDIEAEDVDDDEEDDDENDDIEAEDDMEEINDTTNPDDTAEQPPDPSTIKNKANINHSTPKDKSKLKELKLVVPNMKLPSDEVSDSTEKEESMDCDTVSNTDDASQPEAEINVPNYPEATPCIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -