Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:3157182-3164760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.18 7.8 6.8 0.5 2 20 101 119 100 120 0.94

2 14 0.92 41 4.5 0.3 1 10 128 137 128 150 0.74

3 14 0.00061 0.027 14.5 0.6 1 23 156 178 156 178 0.98

4 14 0.00042 0.019 15.0 2.3 1 23 186 208 186 208 0.95

5 14 0.049 2.2 8.5 3.6 1 23 215 237 215 237 0.98

6 14 0.00012 0.0052 16.8 0.3 3 23 244 264 242 264 0.94

7 14 1e-05 0.00046 20.1 1.0 1 23 270 292 270 292 0.98

8 14 1.9e-06 8.5e-05 22.4 0.4 1 23 298 320 298 320 0.98

9 14 0.00083 0.037 14.1 1.3 3 23 328 348 326 348 0.96

10 14 5.9e-05 0.0026 17.7 0.4 1 23 354 377 354 377 0.95

11 14 0.023 1 9.6 4.9 1 23 383 405 383 405 0.98

12 14 0.00024 0.011 15.8 0.2 1 23 411 434 411 434 0.97

13 14 1.6e-05 0.0007 19.5 3.9 1 23 440 463 440 463 0.96

14 14 1.9e-05 0.00083 19.3 3.7 1 23 469 491 469 492 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.18	7.8	6.8	0.5	2	20	101	119	100	120	0.94
2	14	0.92	41	4.5	0.3	1	10	128	137	128	150	0.74
3	14	0.00061	0.027	14.5	0.6	1	23	156	178	156	178	0.98
4	14	0.00042	0.019	15.0	2.3	1	23	186	208	186	208	0.95
5	14	0.049	2.2	8.5	3.6	1	23	215	237	215	237	0.98
6	14	0.00012	0.0052	16.8	0.3	3	23	244	264	242	264	0.94
7	14	1e-05	0.00046	20.1	1.0	1	23	270	292	270	292	0.98
8	14	1.9e-06	8.5e-05	22.4	0.4	1	23	298	320	298	320	0.98
9	14	0.00083	0.037	14.1	1.3	3	23	328	348	326	348	0.96
10	14	5.9e-05	0.0026	17.7	0.4	1	23	354	377	354	377	0.95
11	14	0.023	1	9.6	4.9	1	23	383	405	383	405	0.98
12	14	0.00024	0.011	15.8	0.2	1	23	411	434	411	434	0.97
13	14	1.6e-05	0.0007	19.5	3.9	1	23	440	463	440	463	0.96
14	14	1.9e-05	0.00083	19.3	3.7	1	23	469	491	469	492	0.96

Sequence Information

Coding Sequence: ATGTCTTGCCTTAATGAGCTAACTACTTGTCTTATACCATCTCCAGGCACTGATAGTGTTAACATTGATGCCCCTGTCCAGGATGAAATGTCCAACAGACTAGCAGAAGAAGCAGATATTTCAAATGGTCCAGGACTGGTTCTAATAAAAGCAGAGTTGGATGCTATGAGTGATGTCGATTCTAACGAGTCTGGTTCAGTAGCTGATGAAGATCCTCTATTCCAAGACACTCCAGTTAGTGCTGCTTTTGTAACCGAtcaaATAGCAAATTTGGACAATGAAGAAAACATGAGATCCTCATACTGTCACAAATGTCAAACCGATTTTGGCAGTATTGACCGGCTGATGAAGCATTTAGCATTTTATGCAAAGCAAGCCCCTTTTGCATGTCCTGTTTGTCATAAAGCATATCTGAAGGATGAAATCTTGCGAGAACATTCTCGAGTACATGTTGCTGAAAAGGCATTTCGATGTAAgttctgtaatttttctttcgacTTGGAAGAAGAGCTAGCTCAACACATTTTGTCACATAATTTATCAGAGCCCCAAATGTTTTTATGTCAAATTTGTAATCGTTACTTCAAAGATTATTACTATTTTAAAAACCATGTCCGTGGAcattcaaaggaaaaacaaatttttacttGCTCAGTTTGTAAAAGAGAATATCAGTCTCGGAGGCGTTACAAATCACACTTGAAGCTCCATCTAGAAAACTGTCTAGCATGTGAAGTGTGCAATAAACGTTTTGCAAATGAACGGAAATTGAAATTGCACATGGATGGACATGATGGAATCAAACCCTTTACCTGTGAACAGTGTGATAAAGCATTTATGAACCCTTATTATTACAAAGTTCACTTGCAGTCCCATATAGATGGAAAAGCTTATGCCTGTGATGTCTGTGGGAAAGCATATACCAGTAGTTTGACACTAAAGAGGCATGTGAAAACACACACTCGGTCAAAAGAATGGTTTTGTGAAACCTGTGGTAAATCGTACAGCTGCAAATCCTCATTACAGATACATGCAGCTACTCATTTAGAGGAAAAGCCTTTTAAATGTCAACAGTGTCCCAAAGCATACACGCAACGAACAGCACTTCGTTTACATGTGGATTCTGTTCATTCGTCTGAGCGTCCTTTTGTCTGTGAAATATGCTCCAAAAATTTTTCTTGCGTTGCTTCCTTGAAACGGCATCATTTCACCCATTCTGAAAAAAAGCCATATCAGTGCGGGttgtgtgaaaaaaattttgtacaaGGTACGCAGTTGAGATCTCACTTAGTCACTGCGCATGGTGACAACAAACAGTTTAGTTGTGAtgtttgctcaaaatttttcacCAGAAAGCAGCATCTGACATCTCACCAAGAGCGAGTGCATCTAAATTTACGCCCGTATAAATGTAAAGAATgtgataaaatttacaaaaccaAGCAGAATGCTGTCAAACACATTCAAAAGCACCACCCAAACAAAGATGTGGACTCTTTACTTGCTCAAGAAGAGAAGGATGACGATTTgaatgaggaagaagaaatcAAAGATGATGACCCTGTTAGAGATGATGACACTGTTAGAGATGATAACACTGTTAGAGATGATGACACAGTCAGAGATGATGACACTGTTAGAGATGATGACACAGTCAGagagtttaaaattaaagtggaaaatttcaattcatag
Protein Sequence: MSCLNELTTCLIPSPGTDSVNIDAPVQDEMSNRLAEEADISNGPGLVLIKAELDAMSDVDSNESGSVADEDPLFQDTPVSAAFVTDQIANLDNEENMRSSYCHKCQTDFGSIDRLMKHLAFYAKQAPFACPVCHKAYLKDEILREHSRVHVAEKAFRCKFCNFSFDLEEELAQHILSHNLSEPQMFLCQICNRYFKDYYYFKNHVRGHSKEKQIFTCSVCKREYQSRRRYKSHLKLHLENCLACEVCNKRFANERKLKLHMDGHDGIKPFTCEQCDKAFMNPYYYKVHLQSHIDGKAYACDVCGKAYTSSLTLKRHVKTHTRSKEWFCETCGKSYSCKSSLQIHAATHLEEKPFKCQQCPKAYTQRTALRLHVDSVHSSERPFVCEICSKNFSCVASLKRHHFTHSEKKPYQCGLCEKNFVQGTQLRSHLVTAHGDNKQFSCDVCSKFFTRKQHLTSHQERVHLNLRPYKCKECDKIYKTKQNAVKHIQKHHPNKDVDSLLAQEEKDDDLNEEEEIKDDDPVRDDDTVRDDNTVRDDDTVRDDDTVRDDDTVREFKIKVENFNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -