Btab002120.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:2541075-2543986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.015 15.3 4.9 1 23 194 216 194 216 0.98 2 13 0.0001 0.0045 17.0 6.0 1 23 222 244 222 244 0.98 3 13 5.8e-05 0.0026 17.7 1.5 1 22 250 271 250 271 0.97 4 13 0.032 1.5 9.1 0.3 11 23 271 283 271 283 0.95 5 13 0.00012 0.0054 16.7 4.3 1 23 289 311 289 311 0.98 6 13 3.9e-06 0.00017 21.4 2.5 1 23 317 339 317 339 0.98 7 13 0.00027 0.012 15.7 6.5 1 23 345 367 345 367 0.98 8 13 0.012 0.53 10.5 1.3 1 18 373 390 373 390 0.95 9 13 2.6e-05 0.0012 18.8 3.4 1 23 392 414 392 414 0.98 10 13 1e-05 0.00047 20.1 3.3 1 23 420 442 420 442 0.98 11 13 1e-05 0.00047 20.1 3.3 1 23 448 470 448 470 0.98 12 13 1e-05 0.00047 20.1 3.3 1 23 476 498 476 498 0.98 13 13 0.021 0.95 9.7 1.6 1 20 504 523 504 523 0.97
Sequence Information
- Coding Sequence
- ATGGACACATCTCAAGATATTACTTTGAAGAAAGCATCGGGCCCAACACTTGTGATGGATACGGCGGATGACGTCCCAGAAGTTGACAAAAAATCGGCATTTGGCGATGACCACGCAGATCTTCTCCATGGCGATTCTCTGTTCGGTCTCTCCGCTCGCTTAAAATTGGAAGTAGACGAAAGTATTACCGACTACTTGCATACTAGTATTGACATTAAGGAAGAAGAGACTTTGCAATCCGACCAATCGGAACGCCCAGTAAAACGCACTGCAAACGATTCCGGAAATGATTCGCGGCATACATGTAATCATGTTCCACTGACTCCGCCTGCTGGAAGTGGAAGCTTTAATGACCAACCACCCCACCAACTGCAAGATCTCCATGGAATTAAACGGGAATCTATCATAGAAGCATGTAATAGCACCACGTCAAACGAGCCTCATATTGAAAGAGCAGTATTACCGACCAATCGAACTGAAATCCGAAACAAACCAGTCAAAAGCACCCAACGTTGTGTATCTTCAACGCGTAAAAACCTTCCGAAACGAAGTATGCGAACGCATCGCAGTGAGCAACCTTTCATTTGCAGTCATTGCTCGTCCTCTTTTAGCCTAAAACACAATTTAAATCTACATATCCAaacgcatactggcgagaaacctttcagctgCAGTCACTGCTCTTCTTCTTTTAGCCAAAAACAGCATTTAATTCTACATATTAGAAAgcatactggcgagaaacctttcagctgTAGTCATTGCTCGTCCTCTTTTAGCGGAAAACAGGATTTAAAGCGACATAttcgaaccCGAAAGGATAATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagctgTAGTCATTGCTCGTCCTCTTTTAAcctaaaacaaaatttaaagcgaCATATCCTAACGCACACTGGCGAGAAACGTTTCagctgcagtcattgctcttcctcttttatcCGAAAGGGTGATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagctgTAGTCATTGCTCGTCCTCTTTTAACCTAAAACACAATTTAAAGCGACATATCCTAACGCacactggcgagaaacctttcagctgcagtcattgctcttcctcttttatcCGAAAGGGTAATTTAAAGAAACCATTCatttgcagtcattgctcttcctcttttagcCGAAAACAGGATTTAAAGCTACATATCCaaacgcatactggtgagaaacctttcagctgcagccattgctcttcctcttttatcCGAAAACAGGATTTAAAGGTACATATTCGAACGCATACcggcgagaaacctttcagctgcagtcattgctcttcctcttttatcCGAAAACAGGATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagttgcagccattgctcttcctcttttatcCGAAAACAGGATTTAAAGGTACATAttcgaacgcatactggcgagaaacctttcagttGCCGTCATTGCTCTTCCGCTTTTAGCCAAAGAACTTTTTTAAAGGTGCATATTTGA
- Protein Sequence
- MDTSQDITLKKASGPTLVMDTADDVPEVDKKSAFGDDHADLLHGDSLFGLSARLKLEVDESITDYLHTSIDIKEEETLQSDQSERPVKRTANDSGNDSRHTCNHVPLTPPAGSGSFNDQPPHQLQDLHGIKRESIIEACNSTTSNEPHIERAVLPTNRTEIRNKPVKSTQRCVSSTRKNLPKRSMRTHRSEQPFICSHCSSSFSLKHNLNLHIQTHTGEKPFSCSHCSSSFSQKQHLILHIRKHTGEKPFSCSHCSSSFSGKQDLKRHIRTRKDNLKVHIRTHTGEKPFSCSHCSSSFNLKQNLKRHILTHTGEKRFSCSHCSSSFIRKGDLKVHIRTHTGEKPFSCSHCSSSFNLKHNLKRHILTHTGEKPFSCSHCSSSFIRKGNLKKPFICSHCSSSFSRKQDLKLHIQTHTGEKPFSCSHCSSSFIRKQDLKVHIRTHTGEKPFSCSHCSSSFIRKQDLKVHIRTHTGEKPFSCSHCSSSFIRKQDLKVHIRTHTGEKPFSCRHCSSAFSQRTFLKVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -