Btab012470.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:896776-909602[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00054 0.024 14.7 0.2 1 23 526 549 526 549 0.95 2 14 4.3e-06 0.00019 21.3 0.8 1 23 557 580 557 580 0.97 3 14 0.31 14 6.0 1.0 1 23 586 608 586 608 0.84 4 14 0.0044 0.2 11.8 0.9 3 23 616 636 614 636 0.97 5 14 0.00047 0.021 14.9 7.4 1 23 641 663 641 663 0.98 6 14 0.00063 0.028 14.5 1.8 3 23 674 695 673 695 0.96 7 14 0.00012 0.0056 16.7 0.8 1 23 700 725 700 725 0.95 8 14 3e-06 0.00014 21.8 2.7 1 23 732 755 732 755 0.96 9 14 5.2e-05 0.0023 17.9 2.0 1 23 767 789 767 789 0.98 10 14 0.0013 0.058 13.5 4.4 1 23 795 818 795 818 0.96 11 14 1.6e-05 0.0007 19.5 3.2 1 23 830 852 830 852 0.95 12 14 0.0048 0.22 11.7 1.4 1 23 862 884 862 884 0.92 13 14 0.00025 0.011 15.7 4.6 1 23 890 912 890 912 0.98 14 14 0.00053 0.024 14.7 3.4 1 23 918 941 918 941 0.98
Sequence Information
- Coding Sequence
- ATGGTCAACTCAATAGAGGAAATTCTTCATCTTATTGAAAGATTACTTGTTATTTTAAAAGAAGGAAGAATGCTGAAATCATACATCTTAACTTTTTGTCTCCAAGAAGTCGAAATTGACAATGGCATCATCATATTGGTTCAGCCTTTCATCACTGCTCTTAAGGATGTATTACTGCAGATGTTTGAAGAATGGGAAATTTCATGGaagaaacagtgttgccagaagAATAATAACcaattggttcctttttccaacTATAACTCCAGCCGTATTTATACTGAAGAGACTTTGAAGACTGATAGTTCCTGCATGCTGAACTCCACCAGACAAACCCTGTATGAAAAAATAGGGAACTCCAATGATCAAGATCCAGTCACGAAATGTCAGGAACCTACACAACATGGATTGCTAGAGAACACATGCATGGAGTTTGCTTCAAATCAACGATGTCAAGATCAAAGTATTTCAGAAACTCCTAATGCATCTTACAGTCTTCCAAATACATCCTCCAGCATTCCTAAAAACGAAAAAGCTATTACTGGGGCTACCCACTTCCCCTTGTGTTCCGAATTGAATACAGATTCTGAATCAAGCGCAGGGAGTACTTTTGATGACAGACCTTCATCAGGACGTGTTAGCCCAtcgtttgaaaatatattttatcctAGAGTTCATCTTGAATTAGAGCATGAAGACTTGTCCCGCGCTGGTGATAAGAACAGTCAAAATACAGGAATTAGCAACTTTCCAACGAATGATGCCTGCTGTCATAGCACTTAtctgaaaactaaaattcagtcaaatttcagaaatatcTCTCAAAATACTCTTGGAAATGAAAGCTATAAAAACATTCATTATGCTAAATTATACTCTCAAGTTGATACTGCATCACACCCCACGGAAAATAACGAAActaatttaaacttttcaaataaagagagccacattttcgaaaatactTCTTTTCCCAGAATCTATTCTCATTCGGAGTCAGATAATCTGTCAATCGTCAATAGTATTAATACGCCCAAGAAAGGCTTTGCCAATGAAGATGTAACATCTCAGACCGAAACACCTTTGAGCAAAGgcgagaatatttttcaaaatgtcgcAAGCCAGTCTAGATTCAGCCATGCTGCAGATGTGAATATGGGTAGTTCAGTTTTAAGTGATTGTAACATGCCTGATGTCAGTTCTTTCACAAACGCTCCATCAAATACTCTTAACGTTGACGATCTGTCTCTATGTGTGGACCATGATACCGTGTCTAAAGAGACTAACCATCTAGGGTCTGTAACTGCTACGGACGTAAATGAAACCTACTCAAATAGACAAACTACTATTGACTCCTCTGTATTGAATAATTCATCATCAAGTTTCCCATCATATTGTTCTTCAACAGCACCAAAAGAAACTCAGTCATTTGGATACTCTCATGTGAAGTTCAAGTCAAAAAATgTACCTGAAAAGGAAACAAGTTCTTGTACATACCAAGTATTGAATGTATTGAAGACACCAATAAAAGAAGGGGAACATTATAAACAAACTCTAGTACATGGAAAGAAAGTTTTCACCTGCAGCTATTGTAATGAGCCCTTTCCTCGCTTGGGAAACATTCGATCTCATCTGGGAAAAGTTCATAAGATCCAGTCTACTCCAATTTTCTCCTGTGattTATGTGGCAAAAAGTTTTCGAAAAAGATGTCTCTCGCATTGCATATTCGTTCTTTACATGATGGAGTAAAGCCTTATGAATGCCAGTTTTGTCTCAAAAGATTTTCTCAGAAAGTTGTAAGAGATACGCACGTCGCCAGACACACAgGAGATTATCAATATGGCTGTAATGAATGTGGGAAGCGGTTTGCTGCCAAGAACAAATTACGGTTTCATATCAAGTCGCATGGTGAACCTCAATTCCATTGCAACTTGTGTAATAAGTCATTTACCACCAGCCAGTATCTTCACAGTCATGAGAAAACTCATGCAAAATTCACCACAGAAGATGCAAGGATTTGTGAGTATTGCAATACAGTATGCTCCAATGAAACAGCACTATTACGACATCAGCGCTACAAACATGGCAAAGCATTGTTTACCTGTGACTCTCCCAACTGTAACAAATCTTTTGTAAGCCGTACCATGTTGTTGAGACATCAAGACCGCCTTCATAATgccaataaaatGATGTATCAGTGTAAGGATTGTGATAAACAATTCTCCCAAAAAAGAAGTCTACAGGATCATGTAAAGCAAAAGCACATGTCAGGGTTGACCGAGGAACAGCTTCGTCCATTCCACTGCACTATCTGTGATAAACGCTATGCCTATGCCAACAAACTTGCTCTCCACATGAAGACACATACTCagGATCCTCCGCATCGCTGTGACCTCTGCACCAAAGCTTTCTACAGGCTGGACTGTCTGAAATTGCATATGGCTTCTAAGCATTTCTTCGCAGATCAGTTGGGTTTTCCAAAGTCACATGCTTGCAATGTGTGCGGTCACAGTTTTGCAACTAAATCTAGTCTGAAAACTCACCAATCGCTCCATTGTCAGAATAGTGAAGACACCATTGCTTTCAATTGTATTCAATGCAAGCAGGTCTTTAAAAGCAGAGCAGCTCTtaattatcatttaaaaaaacacaaaggACAACTCGGTTTTGAATGCAGCTACTGTAAGAAGAAGTTCGTTCGAAAATGTTATCTTGATGATCACATTCAATCACATATCTCAGAACGAAGTTTCAGGTGCGATTTGTGTTCATCAAGTTACAAGCGCAGTAAGCACCTGAGGGAACATGTTCGACGAGCTCATCCTAAAAACATCACTGTCGATTCGCTTCTTGAATCCATCACCAACGAAAGTAGTGATCAGCAAAACTTACTACCTGCAATAAAGGATGAACTGATGATGAGTTTAGCTGCATTGTGA
- Protein Sequence
- MVNSIEEILHLIERLLVILKEGRMLKSYILTFCLQEVEIDNGIIILVQPFITALKDVLLQMFEEWEISWKKQCCQKNNNQLVPFSNYNSSRIYTEETLKTDSSCMLNSTRQTLYEKIGNSNDQDPVTKCQEPTQHGLLENTCMEFASNQRCQDQSISETPNASYSLPNTSSSIPKNEKAITGATHFPLCSELNTDSESSAGSTFDDRPSSGRVSPSFENIFYPRVHLELEHEDLSRAGDKNSQNTGISNFPTNDACCHSTYLKTKIQSNFRNISQNTLGNESYKNIHYAKLYSQVDTASHPTENNETNLNFSNKESHIFENTSFPRIYSHSESDNLSIVNSINTPKKGFANEDVTSQTETPLSKGENIFQNVASQSRFSHAADVNMGSSVLSDCNMPDVSSFTNAPSNTLNVDDLSLCVDHDTVSKETNHLGSVTATDVNETYSNRQTTIDSSVLNNSSSSFPSYCSSTAPKETQSFGYSHVKFKSKNVPEKETSSCTYQVLNVLKTPIKEGEHYKQTLVHGKKVFTCSYCNEPFPRLGNIRSHLGKVHKIQSTPIFSCDLCGKKFSKKMSLALHIRSLHDGVKPYECQFCLKRFSQKVVRDTHVARHTGDYQYGCNECGKRFAAKNKLRFHIKSHGEPQFHCNLCNKSFTTSQYLHSHEKTHAKFTTEDARICEYCNTVCSNETALLRHQRYKHGKALFTCDSPNCNKSFVSRTMLLRHQDRLHNANKMMYQCKDCDKQFSQKRSLQDHVKQKHMSGLTEEQLRPFHCTICDKRYAYANKLALHMKTHTQDPPHRCDLCTKAFYRLDCLKLHMASKHFFADQLGFPKSHACNVCGHSFATKSSLKTHQSLHCQNSEDTIAFNCIQCKQVFKSRAALNYHLKKHKGQLGFECSYCKKKFVRKCYLDDHIQSHISERSFRCDLCSSSYKRSKHLREHVRRAHPKNITVDSLLESITNESSDQQNLLPAIKDELMMSLAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -