Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:906537-919401[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.046 2.1 8.6 1.2 1 23 225 247 225 247 0.96

2 15 8.9e-05 0.004 17.1 2.8 2 23 254 276 253 276 0.96

3 15 0.00015 0.0067 16.4 4.2 1 23 282 305 282 305 0.97

4 15 4.1e-06 0.00018 21.4 1.0 1 23 311 333 311 333 0.98

5 15 9.6e-06 0.00043 20.2 3.9 2 23 340 361 339 361 0.96

6 15 0.017 0.77 10.0 0.2 1 20 367 386 367 388 0.93

7 15 0.021 0.95 9.7 0.4 1 23 434 457 434 457 0.90

8 15 0.53 24 5.3 0.1 3 19 466 482 464 482 0.92

9 15 0.0066 0.3 11.3 0.8 1 20 841 860 841 862 0.91

10 15 0.00039 0.018 15.1 3.5 1 23 880 902 880 902 0.94

11 15 0.00036 0.016 15.3 0.5 1 23 909 931 909 931 0.98

12 15 0.00021 0.0093 16.0 0.3 1 23 939 962 939 962 0.97

13 15 1.4e-05 0.00063 19.7 6.2 1 23 968 990 968 990 0.97

14 15 5.2e-05 0.0023 17.9 4.0 1 23 996 1018 996 1018 0.98

15 15 0.00038 0.017 15.2 2.0 1 23 1024 1047 1024 1047 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.046	2.1	8.6	1.2	1	23	225	247	225	247	0.96
2	15	8.9e-05	0.004	17.1	2.8	2	23	254	276	253	276	0.96
3	15	0.00015	0.0067	16.4	4.2	1	23	282	305	282	305	0.97
4	15	4.1e-06	0.00018	21.4	1.0	1	23	311	333	311	333	0.98
5	15	9.6e-06	0.00043	20.2	3.9	2	23	340	361	339	361	0.96
6	15	0.017	0.77	10.0	0.2	1	20	367	386	367	388	0.93
7	15	0.021	0.95	9.7	0.4	1	23	434	457	434	457	0.90
8	15	0.53	24	5.3	0.1	3	19	466	482	464	482	0.92
9	15	0.0066	0.3	11.3	0.8	1	20	841	860	841	862	0.91
10	15	0.00039	0.018	15.1	3.5	1	23	880	902	880	902	0.94
11	15	0.00036	0.016	15.3	0.5	1	23	909	931	909	931	0.98
12	15	0.00021	0.0093	16.0	0.3	1	23	939	962	939	962	0.97
13	15	1.4e-05	0.00063	19.7	6.2	1	23	968	990	968	990	0.97
14	15	5.2e-05	0.0023	17.9	4.0	1	23	996	1018	996	1018	0.98
15	15	0.00038	0.017	15.2	2.0	1	23	1024	1047	1024	1047	0.97

Sequence Information

Coding Sequence: ATGGAGAACGCAACACCATGGCCCAGTGGCACTATAAGTGAGTCGCTCTCCAATGACTCAGTAATGATCTTGTTTAAAAACGATTCTGACAATGGAGTGCAGTCTGAGTCTCCTTTGTCAACAGGAATGGCGACGAATGTAGAGCCAGAACTGACCTCTCAATCCTTCTTCATCCCAGGAAATATGAATGTAACCAGCTTGAAATCGGATATGGATAATATCACTGCCTTGGACACATTTCAGCTGGATGCCAACGGACAGATCATTCCCCTTTACACAGATCTTGAAGAAGAAAACCCTTTGCTCTTGGAGACTGGGAGTGAGAGCCTAGATTCCAGTCTGTTACCACTGAAGAATAATTCACCAAACAGCCTCAATAGTGGAGACAGTCTGAATCTGAAGAACCTGCTCAGCAATGATATCATTATCACAGTACCATTGCCCTTATCACTGAATGAAAGTAAATTCCCCAACTTACTCAACGTGCAACTGAAGCCACCTGAGAAAGGACAAGAGGATGTAGTCCCGGCAAAGTCACTGCCCAATGAAGCTCCGCCTCCAGACTACATTGAAGAGAGGCTCAAAGTCTTCCAAAATAGTATCGTTGAGTGCAAAATGCCAAAAACCAAGCCTGTCAAATGCAAAGTGAAGAGTGGAAAAGGAGATGCCTTGTACGCTTGTGAATTTTGTGGTATGGAGTTCGAAAAATCTCGACAGTATTACGGTCATCTTCATGTACATTCAGGTGAACAGTTGTGGATTTGTCAGCACTGCAAAGCTTCATTCCAGACCCAGTATCAGTTGCGACGGCATGAGAGGACATACCACCAAGATTTTCGGCCTCACGTTTGTTCCATTTGCAATGAAACATTTGAAAGACATTCTCAGCTTAGTTATCATAGGCGGCGTGTtcatgaaaaggagaagtcttTCAAATGTCAGATCTGCTCAAAAGCGTTTTTTAAACCATCAGATTTAAAAACGCATCTGAATATTCATTTGAAAGTTAATGGTTGCATCTGTGAAACCTGTGGCAGAAGATTTAGTCATGTTTCAAATCTTATTCGGCACCGACGAGTTCATTCTGGTATAAAACCATACATATGTCGTGCCTGTGGACGCCGTTTCACGCAAGTAACCAGCTTGAATGACCATAAAGCATATTGTCGTGCTGTCACGAAACCAATTCAATGCTCTCATTGTTCCGAGCAAATTGCCCCTCATTTGTTTCGGAAACACATGCTCGATGCCCATGGTATCCTGGAGAAGAGGACCAAAACAACAGCTGAAAAGAGACTATACTTTTGCAAGGTGTGTGGTGAaagatttcctttcataaacgCTGTAAAAAAACACCAGTATGATGTCCACTCAAATCCTCAGGCACCTTTAGCTTGCTCCGAATGTTCCAAGGAATTTCAATCGCTCGATGCTTTTCTAGTACACTGCTGCGCAATTAAAAGCAAAGAGAACACATCAAAACCATCAAGGAGGAAGGACAAAGAGCCAACTTCTAAGACTGAAACTGCATCTGAAAATCTCTCTTATGGAGCTCATTTCTTAAGTGAAATTTGTAAAGACCCAAACGTTGTCATAAAAACAGGGACTACATCTGGAAGTTATCAAATTGATAACTACATGAATCTAGACCATGTGGTGAAGGTATCAAATACTTCTGGTAGTGTGGTGAACAGTAGCAATAGCAGTAACTGCGACTCAACAAGAAAAGCAGCAGAAAATCGGAATGACGTTCAACTCAATGCCGGTAACAACCTTGATCTGAATGTTGAGATGTTGGACGCTAACTTGAAATCAATGGAAATGCTCAAAGACATTCCTACCTTGTCAGAAAGAAAACCTGAGAAAGAGACTGAAGATTTAATCGAGCTGTCAACAACGGCCGATTTCTTACCGAATGAACATTCTGATATGAGTGAGAGACTGATGAATAGCAATTATGTAACAATAGACCTAGACTTTAGTAAAGATTTCAcaatcaatagtattttaaatcctgattttacctCATTGGGCAAAGCTCTACCCACAACAGATAAGCTTCCTCCTTTGATACCTTTATATGATAGGCTTGAAAAAGACTTGTTTGATAGCACTGAGGCAAGTGAAAACATCATCAAACTTGTTGGCGCTGACTCTGGCCTTGATTACAAAGCCCTGCTCAATGATGCTAGGGCATTGATTCTAGGTACAAGTGATGGTGACCACAAACTTTCGGAAGCTTTGGGTCAGTTCAATGGTGAAAATCTATCATCAAGTCTCCTCAGGAGCGTTCTCATGCCTGACAATTCAATGGAAAATGATGAACTCTCTGAGATTAACTTTGCTCCCAGCCCTTCGTCCCATGAGAGtcaagaagaaaacaaaattttgtatttaaataaTGAACTCATTATGGAAAAGACAACACTGGATCCACTGAAAGAAAATAGTGAAGGGAACTTGCCATCAAACCAATGTGtaatttttcctggaaagaTTACGTCAAAATTGGAAGAGGTCTACCTTTGCACACACTGCAACAGAGCCTTCTTCAATTTAGAAGAATTGAATGAGCATTCAAAATTGCTTAACCTTCCTGCAGAGACAATTCAACGGGTGAAAGTACCCAAAGAGATACATATATGTCGCTACTGCTCCAAAACATTTTCTAAGCGGAAAAGTTTAACCCAGCATATAGGGTTGCATAGTAATGACAGTTGTAAATACCAGTGCGACGTCTGCAATCAAAAATTTGCATGGAAAACATCACTTAGCCGACATATGGCATCACATGTAAAGGATGAGCAGCTTAAGTTCCCATGCGAGACATGTGACAAGTCCTATGTAACTATGGCTCGATTACAGGAACATATAAAACGGGACCACTACAATCAGCGGCCGCATATGTGTAAGATATGTGCCAAATGCTTTTTCAAGAAGTCTGACCTAAAGGCTCACATGCGCACGCATACTCAGGAAAAACCATACATGTGTGGAACTTGTGCTAAGAGCTTCCGACATGTATCTCATCTCATTCGCCATGAGCGAACCCATACAGGAATAAAGCCGTACAAGTGCAACCACTGCTCTGGTTCTTTTAGCCAGTCAGCAGTCTTGAAAAATCATGTgaAAGTGAAACACCCTGATGTCCTTGCAGAGACAACTGCATGA
Protein Sequence: MENATPWPSGTISESLSNDSVMILFKNDSDNGVQSESPLSTGMATNVEPELTSQSFFIPGNMNVTSLKSDMDNITALDTFQLDANGQIIPLYTDLEEENPLLLETGSESLDSSLLPLKNNSPNSLNSGDSLNLKNLLSNDIIITVPLPLSLNESKFPNLLNVQLKPPEKGQEDVVPAKSLPNEAPPPDYIEERLKVFQNSIVECKMPKTKPVKCKVKSGKGDALYACEFCGMEFEKSRQYYGHLHVHSGEQLWICQHCKASFQTQYQLRRHERTYHQDFRPHVCSICNETFERHSQLSYHRRRVHEKEKSFKCQICSKAFFKPSDLKTHLNIHLKVNGCICETCGRRFSHVSNLIRHRRVHSGIKPYICRACGRRFTQVTSLNDHKAYCRAVTKPIQCSHCSEQIAPHLFRKHMLDAHGILEKRTKTTAEKRLYFCKVCGERFPFINAVKKHQYDVHSNPQAPLACSECSKEFQSLDAFLVHCCAIKSKENTSKPSRRKDKEPTSKTETASENLSYGAHFLSEICKDPNVVIKTGTTSGSYQIDNYMNLDHVVKVSNTSGSVVNSSNSSNCDSTRKAAENRNDVQLNAGNNLDLNVEMLDANLKSMEMLKDIPTLSERKPEKETEDLIELSTTADFLPNEHSDMSERLMNSNYVTIDLDFSKDFTINSILNPDFTSLGKALPTTDKLPPLIPLYDRLEKDLFDSTEASENIIKLVGADSGLDYKALLNDARALILGTSDGDHKLSEALGQFNGENLSSSLLRSVLMPDNSMENDELSEINFAPSPSSHESQEENKILYLNNELIMEKTTLDPLKENSEGNLPSNQCVIFPGKITSKLEEVYLCTHCNRAFFNLEELNEHSKLLNLPAETIQRVKVPKEIHICRYCSKTFSKRKSLTQHIGLHSNDSCKYQCDVCNQKFAWKTSLSRHMASHVKDEQLKFPCETCDKSYVTMARLQEHIKRDHYNQRPHMCKICAKCFFKKSDLKAHMRTHTQEKPYMCGTCAKSFRHVSHLIRHERTHTGIKPYKCNHCSGSFSQSAVLKNHVKVKHPDVLAETTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -