Btab009012.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- -
- Assembly
- GCA_903994105.1
- Location
- NW:927309-941700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0081 0.36 11.0 1.3 1 20 403 422 403 426 0.95 2 20 0.0032 0.15 12.2 1.8 1 23 432 455 432 455 0.95 3 20 4.3e-05 0.0019 18.1 0.5 1 23 461 484 461 484 0.94 4 20 0.00043 0.019 15.0 7.1 1 23 490 512 490 512 0.98 5 20 0.00018 0.0081 16.2 0.5 1 23 518 541 518 541 0.95 6 20 0.012 0.54 10.4 2.9 1 23 547 570 547 570 0.94 7 20 0.0035 0.16 12.1 1.6 1 23 575 597 575 598 0.95 8 20 0.0045 0.2 11.8 0.7 2 19 605 622 604 623 0.95 9 20 0.012 0.56 10.4 3.8 1 23 633 656 633 656 0.95 10 20 0.00054 0.024 14.7 1.2 1 23 662 685 662 685 0.98 11 20 0.51 23 5.3 1.0 1 19 691 709 691 714 0.86 12 20 8.6e-05 0.0038 17.2 2.7 1 23 719 741 719 741 0.98 13 20 0.011 0.49 10.6 3.4 1 23 747 770 747 770 0.95 14 20 0.0049 0.22 11.7 0.5 1 23 776 799 776 799 0.97 15 20 8.6e-06 0.00038 20.4 1.5 1 23 805 828 805 828 0.96 16 20 0.0027 0.12 12.5 4.2 1 23 834 857 834 857 0.97 17 20 1.3e-05 0.0006 19.8 2.9 1 23 863 886 863 886 0.92 18 20 0.026 1.2 9.4 3.1 1 23 892 915 892 915 0.94 19 20 0.0064 0.29 11.3 0.9 1 23 921 944 921 944 0.92 20 20 7.1 3.2e+02 1.7 3.4 1 23 950 973 950 973 0.94
Sequence Information
- Coding Sequence
- ATGGTGAAGTCGGATCACGGTTGCGATCCCCTTGCTGGGCAAAAAAGGATGGAGCAGACTTCAGAAGGTATCCCCTTTGCAGAGCCGAAGAGTGAGCTTGCTTCTGAAGAACTAATGCGGAACGGAAGCTACGGAGcagATCTTTGTCGAGATGCGAGCCTGCTCGGTAATAGATCGGAACTTACTCAGCAGCAACCAGTCGTGTTTCTAAAACATGTCGACGTCAACTTATTCGGCAATGCGCCAATCCACACCGATCGTCTGCAAAGACCAATAGTACctttggaaaatcctgatgtcAAAGTTTTGAAGAACTCAGCAGGATCCACTCTGTTTGAGCCCAAATACGTTACTTCCTCATTGCTGTCGGACGTAAAGGTAGAAGAAACAGAGGACGAAGACATTCTGCCAACAGATCACCCTCTCGAAGATGCTGTCCTTCATCTAGTTAAGCCGGAGATAGACATCGAATACGCACATGGGATTTCAGCCAATGATGAACTGGAACTGAAACCGGATATCAAAATGATCAACGAGTTGGTACCTATGGAGATCAAAGGAGATCTAGACAATGCCCAAAAAGAAATGCGGACACAAAGTTCTAACGTGCTGAATAATCTAGTTGTCCTGCTTGAACGACTCGACCCAGAATTGGTACGCAGTCATTTGAGAGCATTAGAGCCTGCTGCCAATTCGAGTCGTGTTGTCGCTTCATCACAGCTGAAACCAGAGGAAAATTCAAATGTACGTCAAGACTGTGATTGCAATCAAGACCGCGGAAACCATGGAATCAGCCAACCAGTACTGGACATTCCAAAGACACCAACGGACCAACAACAAACACGGTCCAACTCAAGGACCCTAAACAAGTCTGCTGCCACAAATGAGGAAACGCAACATCATCAAACCTATCCGTATGTATCTCCTCGTGGAAATGATTCAATACCTCGTAAGAACTTTGCAACGGGTTCAATGAAGACTCAACGGAATATTGGAATTGGCAGAAAAGAGGTACCATCGTCACAGTCAAAAACTGATGCAAATCATGCagataatgatgaaaaaataatcaaatgtgACCACAATGCAAGGAATGTTGTGCCCACCGGTGAGGTATTTTCCTTGTCTCGTGGAGGTTCCGCAAAATTGGAATCAAAAGCGGGTCCTAGTGCACAAGTCGTGTTCATTCCCAAAGAAGATGGATCATTTCCGTGTGGCCAATGCTCATTGACTTATAAGGCAAGGTCTAGTTTAAGAAGGCATATTCTCTGCGCACACTGTGTCAGTCGGAAGTTTGCATGCAGCCAGTGCCCAAgcaattttaaagtaaaacattATTTAAAACGGCACGTGATTCGTGTCCACGTTGGTGATCGCCCATTTTCGTGTGGTCAATGTCCGAAGAGATTCAAAGTGAAAAGTGCATTAAAGTTACACATCACGTACGCTCACTGTACTGATAAGCCCTTCTCATGTGGTCATTGTGGAAGCAGATTCAAAACGAAAATTCATCTAAAGAGTCATATGCATGTTCACTTGGACGATCGCCCCTTCTCATGTGGTCAgtgtgcaaaaaaatttaaatcaaagggTGCACTAAAAACACACTTGATAAATGTTCACCCAGGCGATCGTACCTTTCTCTGCCATCAGTGTCCGAGCAAATTCAAATCAACGGAAGGATTGAAGAATCATTTCAGGAGTGTCCATGTCTATCGACCCTATCCTTGCGATCAGTGCTTCAGCAAATTCGAAACGAGGGATGATTTACAAGAACACATCACGCAACACCACACCGGCGATCAACCCCTCTCGTGTGACCATTGCCCGAGCAAATTTAAAACCAAGGGTGAATTACAGACTCACGCTTGGCACACTCATGACAGTCACCGGCCCTTCTTTTGTGATCTGTGCTCGCGTAACTTTAAGTCGAAGTATTGTTTAAACGGCCATGTTAAAAATGTCCACAGCACCGGTCGACCGTTTACGTGTGATCAGTGCTCCAGCAAATTCAAATCAAAGAATGGTTTACGAATACATGTCCGGAGCGTCCACGTCGTTGATCGGCCTTTCACCTGTGGTCAGTGCTCAAGCAAATTTAAAAACAAGCGCTCGTTATCATTCCACGTTGCAGGGGTCCACGGCGATCAGAATCATCAGTGTGATCTGTGCTCAAGAAAATTCACCTTGAAAAGTCTTTTAAATTCACACATGATTTCTCACAGCGACGATCGCTGCTTTGCGTGTGGCGAATGCTCGAGTAAatttaaatcgaaaaattcattgAGGCAGCATTTTCGGCACGCTCACAGTGAAGATCGACCCTTTTCATGCCCCCAGTGCTTGCTAAAATTCAAGGCGAAGTTTGCTCTACAGAGCCATGTGAGGAATGCCCATTCTACCGATCGACCTTTCCCCTGCGATCGTTGTTCCAAACGATTCAAATCGAAGGACTATTTACAGGTGCATATGACTCGCGTCCACAGTGATGTTCACCCCTTTCAGTGTGGCGAGTGCACCTGCAAATTCAAATTGAAGACTGATTTACGAAAGCATACGCTCCGAGTTCACATCGGCGATCGACGTTACTCTTGTGAGCATTGCTCGAAGGGATTCAAAACGAAGGGTGATTTACGAAGACACATCGGCCACGTCCATTGCGTCGATCGACCCTATTCGTGCGATCAGTGCCAGCGCAAATTCAAATCCAAGGAAGATTCAAAATCACACTTCAGGCAAGTCCACATAGGGGATCGACCCCACGCGTGTGGTCAGtgttcaaaaaagtttaaactcaAGGCCGCACTGAGGTATCACTTGGAGGAAGTTCATGTTGACGGTCAACCTTACTCGTGTGATATTTGCGCGGGTAAATTCAAATGCAAGCCCTCTGTGCGAAAGCATATGATACATACCCACGGCGCTGGCTAG
- Protein Sequence
- MVKSDHGCDPLAGQKRMEQTSEGIPFAEPKSELASEELMRNGSYGADLCRDASLLGNRSELTQQQPVVFLKHVDVNLFGNAPIHTDRLQRPIVPLENPDVKVLKNSAGSTLFEPKYVTSSLLSDVKVEETEDEDILPTDHPLEDAVLHLVKPEIDIEYAHGISANDELELKPDIKMINELVPMEIKGDLDNAQKEMRTQSSNVLNNLVVLLERLDPELVRSHLRALEPAANSSRVVASSQLKPEENSNVRQDCDCNQDRGNHGISQPVLDIPKTPTDQQQTRSNSRTLNKSAATNEETQHHQTYPYVSPRGNDSIPRKNFATGSMKTQRNIGIGRKEVPSSQSKTDANHADNDEKIIKCDHNARNVVPTGEVFSLSRGGSAKLESKAGPSAQVVFIPKEDGSFPCGQCSLTYKARSSLRRHILCAHCVSRKFACSQCPSNFKVKHYLKRHVIRVHVGDRPFSCGQCPKRFKVKSALKLHITYAHCTDKPFSCGHCGSRFKTKIHLKSHMHVHLDDRPFSCGQCAKKFKSKGALKTHLINVHPGDRTFLCHQCPSKFKSTEGLKNHFRSVHVYRPYPCDQCFSKFETRDDLQEHITQHHTGDQPLSCDHCPSKFKTKGELQTHAWHTHDSHRPFFCDLCSRNFKSKYCLNGHVKNVHSTGRPFTCDQCSSKFKSKNGLRIHVRSVHVVDRPFTCGQCSSKFKNKRSLSFHVAGVHGDQNHQCDLCSRKFTLKSLLNSHMISHSDDRCFACGECSSKFKSKNSLRQHFRHAHSEDRPFSCPQCLLKFKAKFALQSHVRNAHSTDRPFPCDRCSKRFKSKDYLQVHMTRVHSDVHPFQCGECTCKFKLKTDLRKHTLRVHIGDRRYSCEHCSKGFKTKGDLRRHIGHVHCVDRPYSCDQCQRKFKSKEDSKSHFRQVHIGDRPHACGQCSKKFKLKAALRYHLEEVHVDGQPYSCDICAGKFKCKPSVRKHMIHTHGAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -